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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTGGCAGTTCTTGAACGTCATGAGATCCTATCTGGAGTCGCTTTGTTCTGACCTGCCATCTCATACCATCACCAATGTACAGTCAAATAATGACAGGgttagcaatatgaacactggtttgcactttaattattgaaaacagcataaatccagtcaatgatatttcttctatcttatcag

Basic information

species Oryza sativa
transcript LOC_Os03g05200.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g05200.2 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G107651_T01 (Zea mays), 5'ss of exon 13
AGCTTGGCAGTTCTTGAACGTCATGAGATCCTATCTGGAGTCGCTTTGTTCTGACCTGCCATCTCATACCATCACCAATGTACAGTCAAATAATGACAGGgttagcaatatgaacactggtttgcact-ttaattattgaaaacagcataaatccagtcaatgat-atttcttctatcttatcag--------------------
||||||| ||||||| ||  | |||||| ||||  |||| || ||||| ||||||||||  | ||||||||| || |||||||||||||||||||||||||||||||||| ||||| || | |  ||  ||||| |||     |    | | | || | |   ||  |    || || | |  |                     
AGCTTGGAAGTTCTTAAATATAATGAGAACCTACTTGGAATCACTTTGCTCTGACCTGCGCTTTCATACCATTACAAATGTACAGTCAAATAATGACAGGgttagcaatacgaacattgttctctacccttaataattatgttctttgttagttcacttagacatcgtaaaatccatttgagtaatgttagccctgaatgatcag

upper sequence: LOC_Os03g05200.2 (Oryza sativa), 5'ss of exon 15
lower sequence: Vv07s0005g04510.t01 (Vitis vinifera), 5'ss of exon 15
AGCTTGGCAGTTCTTGAACGTCATGAGATCCTATCTGGAGTCGCTTTGTTCTGACCTGCCATCTCATACCATCACCAATGTACAGTCAAATAATGACAGGgttagcaata-tgaacactggtttgc-actttaattattgaaaac--agcataaatccagtcaatgatatttcttctatcttatcag---------------------------------------------------------------
 |||   || || ||| | || |||||   ||| ||||||||  ||||||| ||  ||  ||||||||| ||||| | |||||| ||||| ||||||||||||||  |   ||||   || ||| | |  |||| ||||        | | | |||    |   |   |   |        || ||                                                                
TGCTGCCCAATTTTTGCATGTGATGAGGCGCTACCTGGAGTCATTTTGTTCAGATTTGAGATCTCATACAATCACTAGTGTACAATCAAACAATGACAGGgttagagaagctgaatcatgatttaccatcttaaatatttttttttaatctttaattattttggtatcaaaacgctgcaagtaccaaggatttggcttcagaatagcttatttcatttctttgacatctgaatattcacttatttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29624630|gb|CB629641.1|CB629641
EST:     CTGACCTGCGATCTCATACCATCACCAATGTACAGTCAAATAATGACAGG                         GTTTCGTTGCTTCTAAAAGACAGTTTTATCGATTCATTCCCCTCAAAGGAC
genomic: CTGACCTGCCATCTCATACCATCACCAATGTACAGTCAAATAATGACAGGgttagcaata ... atcttatcagGTTTCGTTGCTTCTAAAAGACAGTTTTATCGATTCATTCCCCTCAAAGGAC
EST: gi|29614852|gb|CB619865.1|CB619865
EST:     CTGACCTGCGATCTCATACCATCACCAATGTACAGTCAAATAATGACAGG                         GTTTCGTTGCTTCTAAAAGACAGTTTTATCGATTCATTCCCCTCAAAGGAC
genomic: CTGACCTGCCATCTCATACCATCACCAATGTACAGTCAAATAATGACAGGgttagcaata ... atcttatcagGTTTCGTTGCTTCTAAAAGACAGTTTTATCGATTCATTCCCCTCAAAGGAC