1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GGGTCAAGCATGGGGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCATgtatgcaaaccttccatcaccttttgttttgcttaactgttgcaaattctttagtgcagagatttaccattttacctcttccttctttgtggctatag
species | Oryza sativa |
transcript | LOC_Os02g58590.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCAT ATCAAGTGGAATTCTGAGGAEST: gi|86428491|gb|CI075172.1|CI075172
genomic: GGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCATgtatgcaaac ... gtggctatagATCAAGTGGAATTCTGAGGA
EST: GGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCAT ATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAGEST: gi|218480194|gb|FG949561.1|FG949561
genomic: GGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCATgtatgcaaac ... gtggctatagATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAG
EST: GGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCAT ATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAGEST: gi|88836323|gb|CI078220.1|CI078220
genomic: GGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCATgtatgcaaac ... gtggctatagATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAG
EST: CTAAATGATGCCCAT ATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAGEST: gi|89174306|gb|CI110504.1|CI110504
genomic: CTAAATGATGCCCATgtatgcaaac ... gtggctatagATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAG
EST: GGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCAT ATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAGEST: gi|44665380|gb|CR278814.1|CR278814
genomic: GGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCATgtatgcaaac ... gtggctatagATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAG
EST: GGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCAT ATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAGEST: gi|29628399|gb|CB633410.1|CB633410
genomic: GGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCATgtatgcaaac ... gtggctatagATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAG
EST: GGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCAT ATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAGEST: gi|86433973|gb|CI094316.1|CI094316
genomic: GGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCATgtatgcaaac ... gtggctatagATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAG
EST: GAACCAATCAAGCTAAATGATGCCCAT ATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAGEST: gi|86491170|gb|CI133803.1|CI133803
genomic: GAACCAATCAAGCTAAATGATGCCCATgtatgcaaac ... gtggctatagATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAG
EST: ATCAAGCTAAATGATGCCCAT ATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAGEST: gi|313081063|gb|HO213649.1|HO213649
genomic: ATCAAGCTAAATGATGCCCATgtatgcaaac ... gtggctatagATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAG
EST: ACTTGGAACCAATCAAGCTAAATGATGCCCAT ATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAGEST: gi|88222701|gb|CI220842.1|CI220842
genomic: ACTTGGAACCAATCAAGCTAAATGATGCCCATgtatgcaaac ... gtggctatagATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAG
EST: ATCAAGCTAAATGATGCCCAT ATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAGEST: gi|29633687|gb|CB638696.1|CB638696
genomic: ATCAAGCTAAATGATGCCCATgtatgcaaac ... gtggctatagATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAG
EST: GGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCAT ATCAAGTGGAATTCTGAGGACTTGAGCTACCTCAAGGAGEST: gi|58688254|gb|CK076941.1|CK076941
genomic: GGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCATgtatgcaaac ... gtggctatagATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAG
EST: GGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCAT ATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAGEST: gi|89176118|gb|CI043139.1|CI043139
genomic: GGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCATgtatgcaaac ... gtggctatagATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAG
EST: CAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCAT ATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAGEST: gi|88840918|gb|CI000880.1|CI000880
genomic: CAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCATgtatgcaaac ... gtggctatagATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAG
EST: GGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCAT ATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAGEST: gi|88834475|gb|CI077758.1|CI077758
genomic: GGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCATgtatgcaaac ... gtggctatagATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAG
EST: GCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCAT ATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAGEST: gi|218489065|gb|FG948408.1|FG948408
genomic: GCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCATgtatgcaaac ... gtggctatagATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAG
EST: GGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCAT ATCAAGTGTAATTCTGAGGACCTGAGCTACCTCAAGGAG
genomic: GGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCATgtatgcaaac ... gtggctatagATCAAGTGGAATTCTGAGGACCTGAGCTACCTCAAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTCAAGCATGGGGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCATgtatgcaaaccttccatcaccttttgttttgcttaactgttgcaaattctttagtgcagagatttaccattttacctcttccttctttgtggctatag
- - - - - - - - - - - - - - - - - - - - - - CAAGCT