Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttttcttgttttcccccatccagggaggtgctctggatgtgtcaaaatgacttgtttagtagtcattttcttaacttaatttgtttatttggccaaacgtatattttgccctacaaaacaatgtgtggcacatagaatacagaaaggatataaaaatcaatgatattgactctagctatgactttatctag

Basic information

species Oryza sativa
transcript LOC_Os02g58340.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g58340.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G133919_T01 (Zea mays), 5'ss of exon 15
TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttttcttgttttcccccatccagggaggtgctctggatgtgtcaaaatgacttgtttagtagtcattttcttaacttaatttgtttatttggccaaacgtatattttgccctacaaaacaatgtgtggcacatagaatacagaaaggatataaaaatcaatgatattgactctagctatgactttatctag
|||||||||||| |||||||||||||||||||||| |||||||||| |||||||||  |||||||||||   ||   | ||    | | ||||||   |  |       ||||| |        |   |   | || ||    | |||  ||         |||      |    |||||||| |    | ||||||     |  || | ||    |  | |       |    |                             
TGGGCTGAAGTACTGTCAGCTGATGCATTCTCAGCTTTTGAAGACGCTGGTTTGGATGATGAGAAGgtatgcttccgcgtga---ctctcatccaaacac-tatagaaaatgtggctgtccccttccatccctcgttatacgttcaaccaaacacacc--cttgtttggtctcccattttgccatg-gcatcaatgt-----agttatactatgtgagagttccctgttttgtag-----------------------------

upper sequence: LOC_Os02g58340.1 (Oryza sativa), 5'ss of exon 15
lower sequence: AT5G65620.1 (Arabidopsis thaliana), 5'ss of exon 15
TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgta-cagtttttcttgt--tttcccccatccagggaggtgctctggatgtgtcaaaatgacttgtttagtagtcattttcttaacttaatttgtttatttggccaaacgtatattttgccctacaaaacaatgtgtggcacatagaatacagaaaggatataaaaatcaatgatattgactctagctatgactttatctag
||||| ||||| ||||| ||||||||||| |||||||||||||||| |||  | ||| |    |||||| |||| | || |      ||    ||  |   |  |  |   |||     |  | ||  | ||| || |  |                                                                                                                              
TGGGCAGAAGTTTTGTCTGCTGATGCATTTTCAGCATTTGAAGACGCTGGACTAGACGACATCAAGgtatcagtatatcctaaaacatctgttatagacacaaatagttgagatacaagattacgaaattttttgttgcaaacag--------------------------------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87010666|gb|CI312358.1|CI312358
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|86489837|gb|CI132470.1|CI132470
EST:     CAGCTGATGCATTCTCAACATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|29685086|gb|CB681361.1|CB681361
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|88548065|gb|CI476978.1|CI476978
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|88966578|gb|CI353129.1|CI353129
EST:     AGCTGATGCATTCTCAGCATTTGAAGACATTGGTTTGGACAAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAAGTCCTTGCGCTTG
genomic: AGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGAC-AATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAAC-AGTCCTTGCGCTTG
EST: gi|27577469|gb|CB000164.1|CB000164
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|86525997|gb|CI166203.1|CI166203
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|86889224|gb|CI315835.1|CI315835
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|86437668|gb|CI119588.1|CI119588
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|88415868|gb|CI536022.1|CI536022
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|88322531|gb|CI542859.1|CI542859
EST:     TCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCANACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: TCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|29628315|gb|CB633326.1|CB633326
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACGGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|86596740|gb|CI286653.1|CI286653
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|89183340|gb|CI045905.1|CI045905
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|29629259|gb|CB634270.1|CB634270
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACGGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|3107195|gb|D42935.1|D42935
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|86497160|gb|CI139793.1|CI139793
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|88223547|gb|CI223396.1|CI223396
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|87005786|gb|CI316205.1|CI316205
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|86906176|gb|CI320107.1|CI320107
EST:     CACCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|88375968|gb|CI530472.1|CI530472
EST:     ATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: ATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|86889992|gb|CI319981.1|CI319981
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGTACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|88907988|gb|CI090584.1|CI090584
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|88220405|gb|CI219965.1|CI219965
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|88453142|gb|CI539325.1|CI539325
EST:     ATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: ATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|163920194|gb|EG714428.1|EG714428
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|87040458|gb|CI195080.1|CI195080
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|87036488|gb|CI191110.1|CI191110
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|88996615|gb|CI389281.1|CI389281
EST:     CAGCTTATGCATTCTCAGCATTTGAAGACGTTGGTTT-GACAATGAGAAG                         GCAATTGAGGAAACT-GCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|88446136|gb|CI552642.1|CI552642
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|58613168|gb|CK040880.1|CK040880
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACGGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|87021331|gb|CI295390.1|CI295390
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|88254054|gb|CI352680.1|CI352680
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|87041614|gb|CI196236.1|CI196236
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|88843387|gb|CI372287.1|CI372287
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGCCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|86883842|gb|CI328790.1|CI328790
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|86862960|gb|CI331761.1|CI331761
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|88971200|gb|CI387167.1|CI387167
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|86862751|gb|CI331642.1|CI331642
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACCTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|88663126|gb|CI476732.1|CI476732
EST:     GGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: GGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|88442096|gb|CI560337.1|CI560337
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|88449195|gb|CI560656.1|CI560656
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|22306852|gb|BQ908074.1|BQ908074
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCNATTGAGGAAACTGGCAGACGATTCAGAGAAACGGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|22305323|gb|BQ906545.1|BQ906545
EST:     AGCTGATGCATTCTCAGCACTTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACGGTCCTTGCGCTTGGA
genomic: AGCTGATGCATTCTCAGCA-TTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|66912656|gb|CX099504.1|CX099504
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACGGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|38471500|gb|CF955631.1|CF955631
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACGGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|88271562|gb|CI387615.1|CI387615
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|88220356|gb|CI219916.1|CI219916
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|18387237|gb|BM420435.1|BM420435
EST:     AGCTGATGCATTCTCAGCATATTGAAGACGTTGGTTTGGACCATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACGGTCCTTGCGCTTGGA
genomic: AGCTGATGCATTCTCAGCAT-TTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|89174907|gb|CI111105.1|CI111105
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|88843719|gb|CI010977.1|CI010977
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|58610594|gb|CK038306.1|CK038306
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACGGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|313084093|gb|HO213876.1|HO213876
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACGGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
EST: gi|9864982|gb|AU100732.1|AU100732
EST:     CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG                         GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA
genomic: CAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 19

TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttt ... ctttatctagGCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAGgtacagtttttcttgttttcccccatccagggaggtgctctggatgtgtcaaaatgacttgtttagtagtcattttcttaacttaatttgtttatttggccaaacgtatattttgccctacaaaacaatgtgtggcacatagaatacagaaaggatataaaaatcaatgatattgactctagctatgactttatctag

- - - - - - - - CAGCTG
- - - - - - - -  AGCTGA
- - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - TGAAGA