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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTCATCCGCAAGCACAGATATTCTTATTGATCTTCTATCTATCGGATCATCTCCATCACAGAATGGCCCGCCAGCAGCAGACTCTACTCCTGCCCAAGgtaaatgtaattctaattgtgctagtcatgtatttccatattttcttatagccatcactgaattgttcaagattaatgtacctgatactaaacctgtttctaccatctctcaag

Basic information

species Oryza sativa
transcript LOC_Os02g56110.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g56110.2 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G054210_T01 (Zea mays), 5'ss of exon 15
CCTTCATCCGCAAGCACAGATATTCTTATTGATCTTCTATCTATCGGATCATCTCCATCACAGAATGGCCCGCCAGCAGCAGACTC---TACTCCTGCCCAAGgtaaatgtaattctaattgtgctagtcatgtatttccatattttc-ttatagccatcactgaattgttcaagattaatgtacctgatactaaacctgtttctaccatctctcaag
   ||| |||||||||||||||||||||| |||||||| || || |||||||||||||||||||||||| | || | | ||||||    |  |||||  ||||||||| || ||| ||    |     |  ||||||||  | | |   ||||  |  |   ||| || |   | | | ||||| | |                              
---TCAACCGCAAGCACAGATATTCTTATGGATCTTCTGTCCATTGGATCATCTCCATCACAGAATGGCACCCCCGTAACAGACTTCCGTCATCCTGGACAAGgtaaaagtgattttagcaatt----tgctgtatttctgtttatgagttatgactgttgttgatttttgttatactgatgtagcag------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27578089|gb|CB000784.1|CB000784
EST:     ATCTCCATCACAGAATGGCCCGCCAGCAGCAGACTCTACTCCTGCCCAAG                         TCGGTGCGATTGTACCTGAAGCTACGGATGTTCTCAGTAGTTTGTCATCAA
genomic: ATCTCCATCACAGAATGGCCCGCCAGCAGCAGACTCTACTCCTGCCCAAGgtaaatgtaa ... atctctcaagTCGGTGCGATTGTACCTGAAGCTACGGATGTTCTCAGTAGTTTGTCATCAA