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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTGGTTGTTATATCGATCAGAGCCAAAGTCTTAATATCCACATGGACCAACCGAACTTTGGGAAGCTAACTTCCCTGCACTTCCACGCTTGGTCCAAGgtaaaatttttagtttcagttcatgttcaatttataattctgcatcaagttcttctacagttcacgtttttgcagctatcttgaatagtatatgcatgaactaaattgtttgatgccag

Basic information

species Oryza sativa
transcript LOC_Os02g56100.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g56100.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 15
TCGTGGTTGTTATATCGATCAGAGCCAAAGTCTTAATATCCACATGGACCAACCGAACTTTGGGAAGCTAACTTCCCTGCACTTCCACGCTTGGTCCAAGgtaaaatttttagtttcagttcatgttcaatttataattctgcatcaagttcttctacagttcacgtttttgcagctatcttgaatagtatatgcatgaactaaattgtttgatgccag
||| || || || || ||||||||||||||  | ||||| |||||||| ||||| |||||||| || || |||||| |||| ||  | || ||||||||||||  |     |||      |  || |    |   || |  |    || ||  | ||   |   |   | | ||| |   || ||| || | |   |   |||  |||           
TCGAGGATGCTACATAGATCAGAGCCAAAGCTTAAATATTCACATGGATCAACCCAACTTTGGAAAACTGACTTCCTTGCATTTTTATGCATGGTCCAAGgtagcaacac-agt----acttttgcttgcctgtgaagt--gagataaatttatgtaatatgtgcaaatatacagttgggtttaattgttt-tatgttgtctattttg-----------

upper sequence: LOC_Os02g56100.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GLYMA04G39500.1 (Glycine max), 5'ss of exon 15
TCGTGGTTGTTATATCGATCAGAGCCAAAGTCTTAATATCCACATGGACCAACCGAACTTTGGGAAGCTAACTTCCCTGCACTTCCACGCTTGGTCCAAGgtaa-aatttttagtttcagttcatgtt-------caatttataattctgcatcaagttcttctaca-------gttcacgtttttgcagctatcttgaatagtatatgcatgaactaaattgtttgatgc-cag--------------------------------------------------------------
||| || || || || ||||||||||||||| | ||||| |||||||| ||||| |||||||| ||||| |||||| |||| ||| | || ||||||||||||  ||      | ||  | |  |||        |||  || | || || |  | || |   || |       ||| |  | ||    | | |||    |  |   |   |||  || ||| ||   | | |||                                                              
TCGAGGATGCTACATAGATCAGAGCCAAAGTTTAAATATTCACATGGATCAACCCAACTTTGGAAAGCTGACTTCCTTGCATTTCTATGCATGGTCCAAGgtagcaacacagtgcttttgcttgtgtgtgtgaagcaagataaatttatgtaggatgtacaaatatatagttgggtttaaatgttatatgttgtctattttgtttccttggtgatttacattattctttacacagttggggaattttaggccaaatgtttgctgatcaattttatgctttttgtttggtcatgaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88509031|gb|CI436537.1|CI436537
EST:     GCACTTCCACGCTTGGTCCAAG                         GGCCTGAAAACTGGAATGTATTATCTAAGAACACGCGCTGCTGCCGATGCA
genomic: GCACTTCCACGCTTGGTCCAAGgtaaaatttt ... ttgatgccagGGCCTGAAAACTGGAATGTATTATCTAAGAACACGCGCTGCTGCCGATGCA