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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGCTTGATTTTCAAGCAGCTGAGAGGCAAAGACTTGAGGAACCAGCTTCTGATGTTGGCTTGGAATCTCTATGTGCATTGgtatgtaaatttttctcgattaaggactgcatgtgagttccctgctactttaatttcatatcatttgacataaaatttgttgagcag

Basic information

species Oryza sativa
transcript LOC_Os02g51430.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g51430.2 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G070045_T01 (Zea mays), 5'ss of exon 11
GTCATGCTTGATTTTCAAGCAGCTGAGAGGCAAAGACTTGAGGAACCAGCTTCTGATGTTGGCTTGGAATCTCTATGTGCATTGgtatgtaaattttt---ctcgattaaggactgcatgtgagttccctgc-tactttaatttcatatcatttgac----ataaaatttgttga-gcag
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||||||||   ||| |    | |      |||   |||||| || ||||| | | || ||| | ||| ||||||     ||    | ||| |  ||||
GTCATGCTTGATTTTCAAGCAGCTGAGAGGCAAAGGCTTGAGGAGCCAGCTTCTGATGTTGGTCTGGAATCTCTATGTGCATTGgtatgttcctttctgcttttggacctcgacgagatgtgaatttcctgccttcctttattccttattatttgatccttatgttgtatgtgggtgcag

upper sequence: LOC_Os02g51430.2 (Oryza sativa), 5'ss of exon 15
lower sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 17
GTCATGCTTGATTTTCAAGCAGCTGAGAGGCAAAGACTTGAGGAACCAGCTTCTGATGTTGGCTTGGAATCTCTATGTGCATTGgtatgtaaatttttctcgattaaggactgcatgtgagttccctgctactttaatttcatatcatttgacataaaatttgttgagcag---------
|| ||| ||||||||||||||||||| | | | ||||| || ||||||||||||||  ||||  ||||| || |||||||  ||||  ||  | ||||   |  ||||   ||| |    |||     | || | |  ||  | ||  ||||||| | |||  |  | ||          
GTGATGATTGATTTTCAAGCAGCTGAAAAGAAGAGACTAGAAGAACCAGCTTCTGAAATTGGTCTGGAACCTTTATGTGCTATGgttagtgtaatttttctg--taagtgttgcgttattgttt----caacataagattgttttctgttgacatgagattcatctaacattgtatttag

upper sequence: LOC_Os02g51430.2 (Oryza sativa), 5'ss of exon 15
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 5'ss of exon 16
GTCATGCTTGATTTTCAAGCAGCTGAGAGGCAAAGACTTGAGGAACCAGCTTCTGATGTTGGCTTGGAATCTCTATGTGCATTGgtatgtaaattttt------ctcgattaaggactgcatgtgagttccctgctactttaattt--catatcatt--tgacataaaatttgttgagcag
|| ||| ||||||||||||||||||| | || ||||||||| ||||| ||||||||  ||||  |||||||| |||||||| |||| |||   | ||        || ||      ||   | |  |||  || |||  |||| |   ||| || ||  ||  ||  |  ||||    |||
GTAATGATTGATTTTCAAGCAGCTGAAAAGCGAAGACTTGAAGAACCTGCTTCTGAAATTGGTCTGGAATCTTTATGTGCAATGgtttgtctctcttaaacaagttccatgtgactctatctcttggttttctactaaattaagtcaccatttctttactgctattgacattgt-atccag

upper sequence: LOC_Os02g51430.2 (Oryza sativa), 5'ss of exon 15
lower sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 16
GTCATGCTTGATTTTCAAGCAGCTGAGAGGCAAAGACTTGAGGAACCAGCTTCTGATGTTGGCTTGGAATCTCTATGTGCATTGgtatgtaaattttt------ctcgattaaggactgcatgtgagttccctgctactttaattt--catatcatt--tgacataaaatttgttgagcag
|| ||| ||||||||||||||||||| | || ||||||||| ||||| ||||||||  ||||  |||||||| |||||||| |||| |||   | ||        || |       ||   | |  |||  || |||  |||| |   ||  || ||  ||  ||  |  ||||    |||
GTAATGATTGATTTTCAAGCAGCTGAAAAGCGAAGACTTGAAGAACCTGCTTCTGAAATTGGTCTGGAATCTTTATGTGCAATGgtttgtctctcttaaacaagttccacgtgactctatctcttggttttctactaaattaagtcaccaattctttactgctattgacattgt-atccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|44670727|gb|CR284161.1|CR284161
EST:     ATGTTGGTTTGGAATCTCCATGTGCATTG                         ATTAACAACAACCTGCGTTGCTACGAACTTTCATCAGAGCTAAGTAGCAGT
genomic: ATGTTGGCTTGGAATCTCTATGTGCATTGgtatgtaaat ... tgttgagcagATTAACAACAACCTGCGTTGCTACGAACTTTCATCAGAGCTAAGTAGCAGT