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TGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGATACTCTACGGGTCTTCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGgtaattgaccaccgctaatacatttattgatctacttaacacattacagggatcataaggctgtacaattccaagtcaacctggttggcaaacctgcatg...
species | Oryza sativa |
transcript | LOC_Os02g44510.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAG GATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAAEST: gi|428266|gb|D24414.1|D24414
genomic: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGgtaattgacc ... ttatattcagGATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAA
EST: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAG GATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAAEST: gi|29629314|gb|CB634325.1|CB634325
genomic: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGgtaattgacc ... ttatattcagGATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAA
EST: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAG GATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAAEST: gi|38483289|gb|CF967091.1|CF967091
genomic: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGgtaattgacc ... ttatattcagGATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAA
EST: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAG GATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAAEST: gi|58594812|gb|CF993120.1|CF993120
genomic: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGgtaattgacc ... ttatattcagGATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAA
EST: TCTGTGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAG GATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAAEST: gi|218480649|gb|FG956875.1|FG956875
genomic: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGgtaattgacc ... ttatattcagGATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAA
EST: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAG GATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAAEST: gi|58692422|gb|CK081109.1|CK081109
genomic: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGgtaattgacc ... ttatattcagGATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAA
EST: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAG GATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAAEST: gi|88321783|gb|CI672927.1|CI672927
genomic: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGgtaattgacc ... ttatattcagGATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAA
EST: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAG GATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAAEST: gi|218479382|gb|FG952388.1|FG952388
genomic: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGgtaattgacc ... ttatattcagGATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAA
EST: CTCAGCGAAGACCCCAATAGTCTCTCAAATCTTGATCAG GATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAAEST: gi|218505372|gb|FG952963.1|FG952963
genomic: CTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGgtaattgacc ... ttatattcagGATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAA
EST: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAG GATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAAEST: gi|58687397|gb|CK076084.1|CK076084
genomic: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGgtaattgacc ... ttatattcagGATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAA
EST: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAG GATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAAEST: gi|58658473|gb|CK047153.1|CK047153
genomic: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGgtaattgacc ... ttatattcagGATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAA
EST: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAG GATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAAEST: gi|88371879|gb|CI681390.1|CI681390
genomic: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGgtaattgacc ... ttatattcagGATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAA
EST: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAG GATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAAEST: gi|27545628|gb|CA767112.2|CA767112
genomic: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGgtaattgacc ... ttatattcagGATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAA
EST: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAG GATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAA
genomic: TCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGgtaattgacc ... ttatattcagGATCTCCCAAATTATGCTCAGCATACTGTGCCCATATTCTCTCTCCCTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATTTGGCCAAATTTCGGCAAACTGCTTCTGGAGATACTCTACGGGTCTTCTATGAAACACTCAGCAAAGACCCCAATAGTCTCTCAAATCTTGATCAGgtaattgaccaccgctaatacatttattgatctacttaacacattacagggatcataaggctgtacaattccaagtcaacctggttggcaaacctgcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG