Sequence
atgc intronic sequence ATGC exonic sequenceGTGGAATGCCTACATTTGCCCTTCCTGTTCAAGATGGTGGGGTTGGTTTTGATTATCGCCTTCATATGGCTGTTCCTGACAAATGGATTGAACTCCTCAAgtaagtgtttcaaattttggttaatagaaatactaattacatatctaatgaacataaactgttttcttgtgttaaattcttttttgtatacattggtttc...
Basic information
species | Oryza sativa |
transcript | LOC_Os02g32660.2 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os02g32660.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G032628_T01 (Zea mays), 5'ss of exon 15
GTGGAATGCCTACATTTGCCCTTCCTGTTCAAGATGGTGGGGTTGGTTTTGATTATCGCCTTCATATGGCTGTTCCTGACAAATGGATTGAACTCCTCAAgtaagtgtttcaaattt---tggttaatagaaatacta----attacatatctaatgaacataaactgttttcttgtgttaaattcttttttgtatacattggtttc
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GTGGAATGCCTACATTTGCCCTTCCTGTTCACGATGGTGGGGTAGGTTTTGACTATCGGATGCATATGGCTGTGGCTGACAAATGGATTGACCTTCTCAAgtaagtgtttcatatgtatgtggacgatcattattttgttttattgggctgcttatttaaataa-ttattttttttggcataaatgttataagtacataca------
upper sequence: LOC_Os02g32660.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GLYMA19G37750.2 (Glycine max), 5'ss of exon 15
GTGGAATGCCTACATTTGCCCTTCCTGTTCAAGATGGTGGGGTTGGTTTTGATTATCGCCTTCATATGGCTGTTCCTGACAAATGGATTGAACTCCTCAAgtaagtgttt---caaattttggttaatagaaatacta-attacatatctaatgaacataaactgttttcttgtgttaaattcttttttgtatacattggtttc
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GTGGAATGCCTACATTCTGCCTTCCTACACAAGATGGTGGGATTGGCTTTGATTATCGCCTGCACATGGCCATTGCAGACAAGTGGATTGAGATTCTCAAgtaaccttctgcttttattctggagcacaaatacatcatgttatcttatgtttcctcttaaatagtcctgattatgtatatataaaattatatatagggc----
upper sequence: LOC_Os02g32660.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GLYMA03G35020.1 (Glycine max), 5'ss of exon 15
GTGGAATGCCTACATTTGCCCTTCCTGTTCAAGATGGTGGGGTTGGTTTTGATTATCGCCTTCATATGGCTGTTCCTGACAAATGGATTGAACTCCTCAAgtaagtgtttcaaattttggttaatagaaatactaattacatatctaatgaacataaactgttttcttgtgttaaattcttttttgta---tacattggtttc-
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GTGGAATGCCAACATTCTGCCTTCCTACGCAAGATGGTGGGGTTGGCTTTGATTATCGCCTGCACATGGCCATTGCAGACAAGTGGATTGAGATTCTCAAgtaacctttt--gcttttattttgtagcacaaata-cagcatgt-tatcttatgtttcctcttaaatagtcctgattatgtatatataaaatatataaggcatg
upper sequence: LOC_Os02g32660.1 (Oryza sativa), 5'ss of exon 15
lower sequence: Vv08s0007g03750.t01 (Vitis vinifera), 5'ss of exon 15
GTGGAATGCCTACATTTGCCCTTCCTGTTCAAGATGGTGGGGTTGGTTTTGATTATCGCCTTCATATGGCTGTTCCTGACAAATGGATTGAACTCCTCAAgtaagtgtttcaaattttggttaatagaaatactaattacatatctaatgaacataaactgttttcttgtgttaaattcttttttgtatacattggtttc--
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GCGGAATGCCAGCATTCTGTATTCCTGTTCAAGATGGTGGTGTGGGATTTGATTATCGCTTACATATGGCCATTGCTGATAAATGGATTGAGCTTCTTAAgtaggcctctgaaaactcatt--gtcttctttcttcttcccctcttcatctttttattttctagcctcaaattaaattcaggttgagcagtgtgaagatgaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|66912774|gb|CX099622.1|CX099622EST: ATGGCTGTTCCTGACAAATGGATTGAACTCCTCAA GCAAAGTGATGAATCTTGGAAGATGGGTGATATTGTGCACACACTGACTAA
genomic: ATGGCTGTTCCTGACAAATGGATTGAACTCCTCAAgtaagtgttt ... ttttacacagGCAAAGTGATGAATCTTGGAAGATGGGTGATATTGTGCACACACTGACTAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGAATGCCTACATTTGCCCTTCCTGTTCAAGATGGTGGGGTTGGTTTTGATTATCGCCTTCATATGGCTGTTCCTGACAAATGGATTGAACTCCTCAAgtaagtgtttcaaattttggttaatagaaatactaattacatatctaatgaacataaactgttttcttgtgttaaattcttttttgtatacattggtttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC