1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataatatactgttatatgtttcttctcacaacttgtagccaagttggtttgatgaatattttatttttatttgcag
species | Oryza sativa |
transcript | LOC_Os02g32610.2 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|29680443|gb|CB676718.1|CB676718
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|29660723|gb|CB656998.1|CB656998
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|29639477|gb|CB644486.1|CB644486
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|88550234|gb|CI480191.1|CI480191
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAATTGGCGGCAATAATGGAATCCTGCTGGACCAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGANACCEST: gi|29625152|gb|CB630163.1|CB630163
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|38480856|gb|CF964945.1|CF964945
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCGGGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|29678550|gb|CB674825.1|CB674825
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|86833192|gb|CI334787.1|CI334787
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|29662085|gb|CB658360.1|CB658360
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|29680716|gb|CB676991.1|CB676991
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|58689699|gb|CK078386.1|CK078386
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|29665413|gb|CB661688.1|CB661688
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|88538562|gb|CI467604.1|CI467604
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGGTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|29664340|gb|CB660615.1|CB660615
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|33675051|gb|CF303290.1|CF303290
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|88511876|gb|CI439382.1|CI439382
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: GAATCCTGCTGGACAAA AGGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACEST: gi|29630303|gb|CB635312.1|CB635312
genomic: GAATCCTGCTGGACAAAgtatctataa ... ttatttgcagA-GAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAAC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|29631490|gb|CB636499.1|CB636499
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGCCCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|29675290|gb|CB671565.1|CB671565
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|88536264|gb|CI466004.1|CI466004
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCNTTGATCCAAAAGTGGCGGCAATGATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGGCCGTCTTTTGCCANTATCATGGAATCCCTGAAACCEST: gi|88555780|gb|CI486061.1|CI486061
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|29672353|gb|CB668628.1|CB668628
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|88553314|gb|CI483416.1|CI483416
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: TGCTGGACAGA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|29628356|gb|CB633367.1|CB633367
genomic: TGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|87015028|gb|CI273426.1|CI273426
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACTCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|58595275|gb|CF993583.1|CF993583
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|88444780|gb|CI696208.1|CI696208
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataatatactgttatatgtttcttctcacaacttgtagccaagttggtttgatgaatattttatttttatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA