1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CCGTTGCGTGCGAAATCCCCTTTATTTATTGGTGACAAGAAAATCACTCTCTCATGGATGGAGCAGCCAAAGAAACCAGCACCTACAACAACAGGgttagatttctattacctaatattccatttccccctcagactttgcatttcattatagttaagtctgctttgtggatcttttag
species | Oryza sativa |
transcript | LOC_Os02g20930.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: ACTCTCTCATGGATGGAGCAGCCAAAGAAACCAGCACCTACAACAACAGG AGGGAAGAGGTCCCAGCCTGCTACAAATGGGAACACCCCTGCGAGCAAGAAEST: gi|55439518|gb|CV733069.1|CV733069
genomic: ACTCTCTCATGGATGGAGCAGCCAAAGAAACCAGCACCTACAACAACAGGgttagatttc ... gatcttttagAGGGAAGAGGTCCCAGCCTGCTACAAATGGGAACACCCCTGCGAGCAAGAA
EST: ACTCTCTCATGGATGGAGCAGCCAAAGAAACCAGCACCTACAACAACAGG AGGGAAGAGGTCCCAGCCTGCTACAAATGGGAACACCCCTGCGAGCAAGAAEST: gi|29640659|gb|CB645668.1|CB645668
genomic: ACTCTCTCATGGATGGAGCAGCCAAAGAAACCAGCACCTACAACAACAGGgttagatttc ... gatcttttagAGGGAAGAGGTCCCAGCCTGCTACAAATGGGAACACCCCTGCGAGCAAGAA
EST: ACTCTCTCATGGATGGAGCAGCCAAAGAAACCAGCACCTACAACAACAGG AGGGAAGAGGTCCCAGCCTGCTACAAATGGGAACACCCCTGCGAGCAAGAAEST: gi|89195498|gb|CI051611.1|CI051611
genomic: ACTCTCTCATGGATGGAGCAGCCAAAGAAACCAGCACCTACAACAACAGGgttagatttc ... gatcttttagAGGGAAGAGGTCCCAGCCTGCTACAAATGGGAACACCCCTGCGAGCAAGAA
EST: AAGAAACCAGCACCTACAACAACAGG AGGGAAGAGGTCCCAGCCTGCTACAAATGGGAACACCCCTGCGAGCAAGAAEST: gi|29615478|gb|CB620490.1|CB620490
genomic: AAGAAACCAGCACCTACAACAACAGGgttagatttc ... gatcttttagAGGGAAGAGGTCCCAGCCTGCTACAAATGGGAACACCCCTGCGAGCAAGAA
EST: ACTCTCTCATGGATGGAGCAGCCAAAGAAACCAGCACCTACAACAACAGG AGGGAAGAGGTCCCAGCCTGCTACAAATGGGAACACCCCTGCAAGCAAGAA
genomic: ACTCTCTCATGGATGGAGCAGCCAAAGAAACCAGCACCTACAACAACAGGgttagatttc ... gatcttttagAGGGAAGAGGTCCCAGCCTGCTACAAATGGGAACACCCCTGCGAGCAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGTTGCGTGCGAAATCCCCTTTATTTATTGGTGACAAGAAAATCACTCTCTCATGGATGGAGCAGCCAAAGAAACCAGCACCTACAACAACAGGgttagatttctattacctaatattccatttccccctcagactttgcatttcattatagttaagtctgctttgtggatcttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA