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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCGATGCGCTTGCTAAGATGGTGGATCCAGCATTAAATGGAATGTACCCTGCTAAATCGCTCTCCCGTTTTGCGGACATAATCGCGCTGTGTGTTCAGgtatgttcatgcgtttgcattgtgatagatctttagacattgatataggtacatagtaatcagtgagcacacatggagaccttcatgaaatccaaaatgg...

Basic information

species Oryza sativa
transcript LOC_Os02g09740.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g09740.2 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G103070_T01 (Zea mays), 5'ss of exon 15
TATCGATGCGCTTGCTAAGATGGTGGATCCAGCATTAAATGGAATGTACCCTGCTAAATCGCTCTCCCGTTTTGCGGACATAATCGCGCTGTGTGTTCAGgtatgttcatgcgtt-tgcattgtgatagatctttagacattgatataggta-catagtaatcagtgagcacacatggagaccttcatgaaatccaaaatgg
||| ||||| ||||||| |||||| |||||||||||||| ||||||||||| |||||||| ||||| |||||||| ||| |||| || || || |||||||||| ||| ||  || ||     || ||  |  ||   |  | ||   | |  ||| ||   |    |    |   ||| |   ||||        |||   
TATTGATGCACTTGCTAGGATGGTTGATCCAGCATTAAACGGAATGTACCCAGCTAAATCACTCTCTCGTTTTGCAGACGTAATTGCACTCTGCGTTCAGgtatattcttgatttgtgacacatgttatgttattgatctgtaatggcgctctcatggtggcctaaaaattaaaggggaaaaaatcattcgtggagaaac--

upper sequence: LOC_Os02g09740.2 (Oryza sativa), 5'ss of exon 15
lower sequence: PP1S284_52V6.1 (Physcomitrella patens), 5'ss of exon 16
TATCGATGCGCTTGCTAAGATGGTGGATCCAGCATTAAATGGAATGTACCCTGCTAAATCGCTCTCCCGTTTTGCGGACATAATCGCGCTGTGTGTTCAGgtatgtt-catgcgtttgca-------ttgtgatagatctt----tagacattg-atataggtacatagtaatcagtgagcacacatggaga-------ccttcatgaaa-tccaaaatgg---------------------------------------
 ||||| || || || | |||||||||||||||||| || || ||||| ||||| ||||| ||||||||||| || ||| |  | ||||| ||||| |||||||| | |  | |||  ||       |  ||  | ||       ||| ||||  ||    ||  | |   |    | ||| |  |  || |        |||| || |  |  | |   |                                       
CATCGACGCTCTAGCAAGGATGGTGGATCCAGCATTGAAGGGCATGTATCCTGCCAAATCTCTCTCCCGTTTCGCTGACGTTGTTGCGCTTTGTGTCCAGgtatgctactcgtgttctcaatcaatttcttggcatattcactgataggcattatattcgagtggaaaaccaggtttcagctcttaaagaaagactttttcttcctggatctttagagcagactcgaaattacgtaacttgcttcattcctgttctgcag