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GTAGAGAAGTTCATAAATGACGCCACTTCAAAGgtaatctgaaatcatcacaaggatgttcattcccccctttgaaattagggtagggttaaaaaatgtaaaactgcactgattgctgcccctggccccatct...
species | Oryza sativa |
transcript | LOC_Os02g07760.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GTAGAGAAGTTCATAAATGACGCCACTTCAAAG GGAGCAAACATCATGCTTGGTGGTAAAAGGCACAGCCTTGGGATGTCATTCEST: gi|218485663|gb|FG949794.1|FG949794
genomic: GTAGAGAAGTTCATAAATGACGCCACTTCAAAGgtaatctgaa ... ccttttgcagGGAGCAAACATCATGCTTGGTGGTAAAAGGCACAGCCTTGGGATGTCATTC
EST: GTAGAGAAG-TCATAAATGACGCCACTTCAAAG GGAGCAAACATCATGCTTGGTGGTAAAAGGCACAGCCTTGGGATGTCATTCEST: gi|218482143|gb|FG968613.1|FG968613
genomic: GTAGAGAAGTTCATAAATGACGCCACTTCAAAGgtaatctgaa ... ccttttgcagGGAGCAAACATCATGCTTGGTGGTAAAAGGCACAGCCTTGGGATGTCATTC
EST: GTAGAGAAGTTCATAAATGACGCCACTTCAAAG GGAGCAAACATCATGCTTGGTGGTAAAAGGCACAGCCTTGGGATGTCATTCEST: gi|66918914|gb|CX105762.1|CX105762
genomic: GTAGAGAAGTTCATAAATGACGCCACTTCAAAGgtaatctgaa ... ccttttgcagGGAGCAAACATCATGCTTGGTGGTAAAAGGCACAGCCTTGGGATGTCATTC
EST: GTAGAGAAGTTCATAAATGACGCCACTTCAAAG GGAGCAAACATCATGCTTGGEST: gi|58694576|gb|CK083263.1|CK083263
genomic: GTAGAGAAGTTCATAAATGACGCCACTTCAAAGgtaatctgaa ... ccttttgcagGGAGCAAACATCATGCTTGG
EST: GTAGAGAAGTTCATAAATGACGCCACTTCAAAG GGAGCAAACATCATGCTTGGTGG
genomic: GTAGAGAAGTTCATAAATGACGCCACTTCAAAGgtaatctgaa ... ccttttgcagGGAGCAAACATCATGCTTGGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGAGAAGTTCATAAATGACGCCACTTCAAAGgtaatctgaaatcatcacaaggatgttcattcccccctttgaaattagggtagggttaaaaaatgtaaaactgcactgattgctgcccctggccccatct
- - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccatc