1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
AAACCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTACCGgtactacattattccagaacttaattactaccgatggcgcttgaagtagtagtttttaccgatttcttttcaatagtttttacagtagtagcatatcttaccttgtacaagcccttttgttccacgtatgtttgatctcactattttgatcaattttggcag
species | Oryza sativa |
transcript | LOC_Os02g02750.2 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: CCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTACCG TGGCTCTCTACATGCATTTTGCTACATCTGTTATCCATGAAATCACCAATGEST: gi|33803550|gb|CF327650.1|CF327650
genomic: CCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTACCGgtactacatt ... attttggcagTGGCTCTCTACATGCATTTTGCTACATCTGTTATCCATGAAATCACCAATG
EST: CCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTACCG TGGCTCTCTACATGCATTTTGCTACATCTGTTATCCATGAAATCACCAATGEST: gi|88691614|gb|CI733692.1|CI733692
genomic: CCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTACCGgtactacatt ... attttggcagTGGCTCTCTACATGCATTTTGCTACATCTGTTATCCATGAAATCACCAATG
EST: CCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTACCG TGGCTCTCTACATGCATTTTGCTACATCTGTTATCCATGAAATCACCAATGEST: gi|86594261|gb|CI251133.1|CI251133
genomic: CCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTACCGgtactacatt ... attttggcagTGGCTCTCTACATGCATTTTGCTACATCTGTTATCCATGAAATCACCAATG
EST: CCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTACCG TGGCCCTCTACATGCATTTTGCTACATCTGTTATCCATGAAATCACCAATGEST: gi|33803552|gb|CF327651.1|CF327651
genomic: CCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTACCGgtactacatt ... attttggcagTGGCTCTCTACATGCATTTTGCTACATCTGTTATCCATGAAATCACCAATG
EST: CCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTACCG TGGCTCTCTACATGCATTTTGCTACATCTGTTATCCATGAAATCACCAATGEST: gi|89173678|gb|CI041571.1|CI041571
genomic: CCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTACCGgtactacatt ... attttggcagTGGCTCTCTACATGCATTTTGCTACATCTGTTATCCATGAAATCACCAATG
EST: TTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTACCG TGGCTCTCTACATGCATTTTGCTACATCTGTTATCCATGAAATCACCAATG
genomic: TTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTACCGgtactacatt ... attttggcagTGGCTCTCTACATGCATTTTGCTACATCTGTTATCCATGAAATCACCAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTACCGgtactacattattccagaacttaattactaccgatggcgcttgaagtagtagtttttaccgatttcttttcaatagtttttacagtagtagcatatcttaccttgtacaagcccttttgttccacgtatgtttgatctcactattttgatcaattttggcag
- - - - - - - - GAGCAG
- - - - - - - - - GCAGCT