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AGACCAATCATCCTCGCACTATCCAATCCAACATCACAATCTGAATGTACTGCTGAACAGGCATATTCATGGAGTAAGgtgatattccatgtgcaacctcacgccatctatgatctatcccattgagatcaacacatatatgaactataaacttctgtaaattatgtcacaagcatttatgctttataacttatcaaatgatacatcatgcag
species | Oryza sativa |
transcript | LOC_Os01g54030.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: CAACATCACAATCTGAATGTACTGCTGAACAGGCATATTCATGGAGTAAG GGCCGTGCAATATTTGGGAGTGGAAGTCCATTTGATCCAGTTAAATACAATEST: gi|33693337|gb|CF321576.1|CF321576
genomic: CAACATCACAATCTGAATGTACTGCTGAACAGGCATATTCATGGAGTAAGgtgatattcc ... catcatgcagGGCCGTGCAATATTTGGGAGTGGAAGTCCATTTGATCCAGTTAAATACAAT
EST: TACTGCTGAACAGGCATATTCATGGAGTAAG GGCCGTGCAATATTTGGGAGTGGAAGTCCATTTGATCCAGTTAAATACAATEST: gi|218483917|gb|FG944280.1|FG944280
genomic: TACTGCTGAACAGGCATATTCATGGAGTAAGgtgatattcc ... catcatgcagGGCCGTGCAATATTTGGGAGTGGAAGTCCATTTGATCCAGTTAAATACAAT
EST: CAACATCACAATCTGAATGTACTGCTGAACAGGCATATTCATGGAGTAAG GGCCGTGCCATATTTTGGGAGTGGAAGTCCCATT-GATCCAEST: gi|33679702|gb|CF307941.1|CF307941
genomic: CAACATCACAATCTGAATGTACTGCTGAACAGGCATATTCATGGAGTAAGgtgatattcc ... catcatgcagGGCCGTGCAATATTT-GGGAGTGGAAGTCC-ATTTGATCCA
EST: CAACATCACAATCTGAATGTACTGCTGAACAGGCATATTCATGGAGTAAG GGCCGTGCAATATTTGGGAGTGGAAGTCCATTTGATCCAGTTAAATACAATEST: gi|218478759|gb|FG954798.1|FG954798
genomic: CAACATCACAATCTGAATGTACTGCTGAACAGGCATATTCATGGAGTAAGgtgatattcc ... catcatgcagGGCCGTGCAATATTTGGGAGTGGAAGTCCATTTGATCCAGTTAAATACAAT
EST: CTGAACAGGCATATTCATGNGAGTAAG GGCCGTGCAATATTTGGGAGTGGAAGTCCATTTGATCCAGTTAAATACAAEST: gi|218492981|gb|FG952831.1|FG952831
genomic: CTGAACAGGCATATTCATG-GAGTAAGgtgatattcc ... catcatgcagGGCCGTGCAATATTTGGGAGTGGAAGTCCATTTGATCCAGTTAAATACAA
EST: CAACATCACAATCTGAATGTACTGCTGAACAGGCATATTCATGGAGTAAG GGCCGTGCAATATTTGGGAGTGGAAGTCCATTTGATCCAGTTAAATACAATEST: gi|218486774|gb|FG956348.1|FG956348
genomic: CAACATCACAATCTGAATGTACTGCTGAACAGGCATATTCATGGAGTAAGgtgatattcc ... catcatgcagGGCCGTGCAATATTTGGGAGTGGAAGTCCATTTGATCCAGTTAAATACAAT
EST: CAACATCACAATCTGAATGTACTGCTGAACAGGCATATTCATGGAGTAAG GGCCGTGCAATATTTGGGAGTGGAAGTCCATTTGATCCAGTTAAATACAAT
genomic: CAACATCACAATCTGAATGTACTGCTGAACAGGCATATTCATGGAGTAAGgtgatattcc ... catcatgcagGGCCGTGCAATATTTGGGAGTGGAAGTCCATTTGATCCAGTTAAATACAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACCAATCATCCTCGCACTATCCAATCCAACATCACAATCTGAATGTACTGCTGAACAGGCATATTCATGGAGTAAGgtgatattccatgtgcaacctcacgccatctatgatctatcccattgagatcaacacatatatgaactataaacttctgtaaattatgtcacaagcatttatgctttataacttatcaaatgatacatcatgcag
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