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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACATGCAATAAGACCGATTTGGTTTCACCTAAGCAATCTGCAGTATCTGTATCTGAGGCCAAACGCCATACTTCATTGTTCTTTGCACTTTGCACGAAGgtctgtagatgtaaacaatgttagcttgttctgttttttttttctgccggaggtagtaaaaccattttccttcttccag

Basic information

species Oryza sativa
transcript LOC_Os01g49940.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g49940.2 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G466139_T01 (Zea mays), 5'ss of exon 12
TACATGCAATAAGACCGATTTGGTTTCACCTAAGCAATCTGCAGTATCTGTATCTGAGGCCAAACGCCATACTTCATTGTTCTTTGCACTTTGCACGAAGgtctgtagatgtaaacaatgttagcttgttctgttttttttttctgccggaggtagtaaaaccattttcctt-cttccag
|         |||||    | ||||||  | || || || |||||||||||||||||||| || || | |||||| |||||||||||||||||||| ||||| |  | ||| ||| | |   | |||| ||| ||  | | || ||  ||  || |||||| ||||||  || |||||||
TGGGCCATTCAAGACATCATCGGTTTCTACAAAACAGTCAGCAGTATCTGTATCTGAGGCAAAGCGGCGTACTTCTTTGTTCTTTGCACTTTGCACCAAGgtatccatatgaaaatagt---accttgctcttttcctgtcttttg--ggctgttgtaaaaacatttttttttcttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29628452|gb|CB633463.1|CB633463
EST:     TATCTGAGGCCAAACGCCATACTTCATTGTTCTTTGCACTTTGCACGAAG                         AGGCCCATTCTTCTTCAACATCTGTTCAATGTTTATGGAAGGTCTCCAAAA
genomic: TATCTGAGGCCAAACGCCATACTTCATTGTTCTTTGCACTTTGCACGAAGgtctgtagat ... cttcttccagAGGCCCATTCTTCTTCAACATCTGTTCAATGTTTATGGAAGGTCTCCAAAA
EST: gi|58610716|gb|CK038428.1|CK038428
EST:     TATCTGAGGCCAAACGCCATACTTCATTGTTCTTTGCACTTTGCACGAAG                         AGGCCCATTCTTCTTCAACATCTGTTCAATGTTTATGGAAGGTCTCCAAAA
genomic: TATCTGAGGCCAAACGCCATACTTCATTGTTCTTTGCACTTTGCACGAAGgtctgtagat ... cttcttccagAGGCCCATTCTTCTTCAACATCTGTTCAATGTTTATGGAAGGTCTCCAAAA