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AAAGGCTGTACATCTTGAACCAGTGCCATTTGACATGGACCGTGATTTGATTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAGgtattgctcattcaaattctcgtcatactgatggcatatgttgtttacatacttcacgcgtgtagaacgttctcattttgcttacttggtcctttgaatc...
species | Oryza sativa |
transcript | LOC_Os01g46750.4 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAG GGAACAATTGACAACATGTACAGAAGTGCCANAATGAGCTCGCCATGCCGTEST: gi|88376684|gb|CI537988.1|CI537988
genomic: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAGgtattgctca ... cgatttgcagGGAACAATTGACAACATGTACAGAAGTGCCA-AATGAGCTCGCCATGCCGT
EST: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAG GGAACAATTGACNACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTCEST: gi|88473320|gb|CI410591.1|CI410591
genomic: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAGgtattgctca ... cgatttgcagGGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTC
EST: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAG GGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTCEST: gi|87031853|gb|CI272554.1|CI272554
genomic: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAGgtattgctca ... cgatttgcagGGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTC
EST: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAG GGAACAATAGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTCEST: gi|86851760|gb|CI316329.1|CI316329
genomic: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAGgtattgctca ... cgatttgcagGGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTC
EST: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAG GGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTCEST: gi|38481557|gb|CF965646.1|CF965646
genomic: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAGgtattgctca ... cgatttgcagGGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTC
EST: TTAGTCGAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAG GGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTCEST: gi|88297470|gb|CI547948.1|CI547948
genomic: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAGgtattgctca ... cgatttgcagGGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTC
EST: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAG GGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTCEST: gi|87020943|gb|CI269660.1|CI269660
genomic: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAGgtattgctca ... cgatttgcagGGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTC
EST: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACCACCAG GGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTCEST: gi|88383770|gb|CI545921.1|CI545921
genomic: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAGgtattgctca ... cgatttgcagGGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTC
EST: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAG GGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTCEST: gi|88477920|gb|CI415191.1|CI415191
genomic: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAGgtattgctca ... cgatttgcagGGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTC
EST: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTAGTACCAG GGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTCEST: gi|86862327|gb|CI330209.1|CI330209
genomic: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAGgtattgctca ... cgatttgcagGGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTC
EST: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAG GGAACAATTGACAACATGTACAGAAGGTGCCAAATGAGCTCGCCATGCCTTEST: gi|86425938|gb|CI071035.1|CI071035
genomic: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAGgtattgctca ... cgatttgcagGGAACAATTGACAACATGTACAGAAG-TGCCAAATGAGCTCGCCATGCCGT
EST: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAG GGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTCEST: gi|88447311|gb|CI533952.1|CI533952
genomic: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAGgtattgctca ... cgatttgcagGGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTC
EST: TTACTCCAACATATAAAAANAAGCGCCCTCAATTGCTCAAGTACTACCAG GGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTGEST: gi|88838591|gb|CI375139.1|CI375139
genomic: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAGgtattgctca ... cgatttgcagGGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTC
EST: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAG GGAACAA-TGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTCEST: gi|88489629|gb|CI426901.1|CI426901
genomic: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAGgtattgctca ... cgatttgcagGGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTC
EST: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAG GGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTCEST: gi|29618099|gb|CB623111.1|CB623111
genomic: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAGgtattgctca ... cgatttgcagGGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTC
EST: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAG GGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTCEST: gi|88515706|gb|CI443360.1|CI443360
genomic: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAGgtattgctca ... cgatttgcagGGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTC
EST: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAG GGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTCEST: gi|27548326|gb|CA766515.2|CA766515
genomic: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAGgtattgctca ... cgatttgcagGGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTC
EST: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAG GGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTC
genomic: TTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAGgtattgctca ... cgatttgcagGGAACAATTGACAACATGTACAGAAGTGCCAAATGAGCTCGCCATGCCGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGCTGTACATCTTGAACCAGTGCCATTTGACATGGACCGTGATTTGATTACTCCAACATATAAAAAGAAGCGCCCTCAATTGCTCAAGTACTACCAGgtattgctcattcaaattctcgtcatactgatggcatatgttgtttacatacttcacgcgtgtagaacgttctcattttgcttacttggtcctttgaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC