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CGTGGCGAAATCTGCATCAGGGGAGAAACAGTATTCTCAGGATACTACAAGCGTGAAGACCTTACAAAGGATGTTTTGATTGATGGATGGTTCCATACTGgtatgtcttgctttttcatagttttttttttctctccttatgggggctttttgtagattttagtggctgcagcagtaaaaagaatgtcagataccatttc...
species | Oryza sativa |
transcript | LOC_Os01g46750.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: ATGGTTCCATACTG GAGACATTGGTGAGTGGCAACCTGATGGAAGTATGAAAATCATAGATCGCAEST: gi|58679458|gb|CK068145.1|CK068145
genomic: ATGGTTCCATACTGgtatgtcttg ... ctgcttgcagGAGACATTGGTGAGTGGCAACCTGATGGAAGTATGAAAATCATAGATCGCA
EST: GCGTGAAGACCTTACAAAGGATGTTTTGATTGATGGATGGTTCCATACTG GAGACATTGGTGAGTGGCAACCTGATGGAAGTATGAAAATCATAGATCGCAEST: gi|87020943|gb|CI269660.1|CI269660
genomic: GCGTGAAGACCTTACAAAGGATGTTTTGATTGATGGATGGTTCCATACTGgtatgtcttg ... ctgcttgcagGAGACATTGGTGAGTGGCAACCTGATGGAAGTATGAAAATCATAGATCGCA
EST: GATGGATGGTTCCATACTG GAGACATTGGTGAGTGGCAACCTGATGGAAGTATGAAAATCATAGATCGCTEST: gi|27576205|gb|CA998899.1|CA998899
genomic: GATGGATGGTTCCATACTGgtatgtcttg ... ctgcttgcagGAGACATTGGTGAGTGGCAACCTGATGGAAGTATGAAAATCATAGATCGCA
EST: GCGTGAAGACCTTACAAAGGATGTTTTGATTGATGGATGGTTCCATACTG GAGACATTGGTGAGTGGCAACCTGATGGAAGTATGAAAATCATAGATCGCAEST: gi|29618099|gb|CB623111.1|CB623111
genomic: GCGTGAAGACCTTACAAAGGATGTTTTGATTGATGGATGGTTCCATACTGgtatgtcttg ... ctgcttgcagGAGACATTGGTGAGTGGCAACCTGATGGAAGTATGAAAATCATAGATCGCA
EST: GCGTGAAGACCTTACAAAGGATGTTTTGATTGATGGATGGTTCCATACTG GAGACATTGGTGAGTGGCAACCTGATGGAAGTATGAAAATCATAGATCGCAEST: gi|56157720|gb|C25972.2|C25972
genomic: GCGTGAAGACCTTACAAAGGATGTTTTGATTGATGGATGGTTCCATACTGgtatgtcttg ... ctgcttgcagGAGACATTGGTGAGTGGCAACCTGATGGAAGTATGAAAATCATAGATCGCA
EST: GCGTGAAGACCTTACAAAGGATGTTTTGATTGATGGATGGTTCCATACTG GAGACATTGGTGAGTGGCAACCTGATGGAAGTATGAAA-TCATAGAT
genomic: GCGTGAAGACCTTACAAAGGATGTTTTGATTGATGGATGGTTCCATACTGgtatgtcttg ... ctgcttgcagGAGACATTGGTGAGTGGCAACCTGATGGAAGTATGAAAATCATAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTGGCGAAATCTGCATCAGGGGAGAAACAGTATTCTCAGGATACTACAAGCGTGAAGACCTTACAAAGGATGTTTTGATTGATGGATGGTTCCATACTGgtatgtcttgctttttcatagttttttttttctctccttatgggggctttttgtagattttagtggctgcagcagtaaaaagaatgtcagataccatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaa