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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAATATGAAACTGAAGAAGAAACTTCAAAGCTATTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccacatctggactaatgcttacatattactgtccttacctggcaatatcgtgtttccaaatgtatgagaccttcgtttcatgaattttag

Basic information

species Oryza sativa
transcript LOC_Os01g44220.7
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88972666|gb|CI717392.1|CI717392
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88595160|gb|CI715316.1|CI715316
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88503814|gb|CI431320.1|CI431320
EST:     GGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: GGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88564532|gb|CI495249.1|CI495249
EST:     CACAAAGATAAG                         GAACTTTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATT-C
genomic: CACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88688080|gb|CI731656.1|CI731656
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|15848178|gb|BI796454.1|BI796454
EST:     TGTTTGAAGGCAAGGTCCCACATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TGTTTGAAGGCAAGGTCCCA-ATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88554257|gb|CI484424.1|CI484424
EST:     CACAAAGATAAG                         GGACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: CACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88559223|gb|CI489782.1|CI489782
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGGGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGGTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88542426|gb|CI471754.1|CI471754
EST:     GTATAGGCGAGAACACAAAGATTAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: GTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88531749|gb|CI460254.1|CI460254
EST:     CAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: CAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88550785|gb|CI480782.1|CI480782
EST:     AACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: AACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88537698|gb|CI466666.1|CI466666
EST:     CGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: CGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88677193|gb|CI731306.1|CI731306
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88524857|gb|CI453810.1|CI453810
EST:     CAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: CAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88668771|gb|CI719728.1|CI719728
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGACAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88545085|gb|CI474622.1|CI474622
EST:     AGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: AGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88973522|gb|CI717950.1|CI717950
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88544866|gb|CI472393.1|CI472393
EST:     GTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: GTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88669876|gb|CI723992.1|CI723992
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88455547|gb|CI521767.1|CI521767
EST:     GTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: GTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88667926|gb|CI722665.1|CI722665
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88675824|gb|CI729396.1|CI729396
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88672397|gb|CI726513.1|CI726513
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|89181765|gb|CI113271.1|CI113271
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88544937|gb|CI472464.1|CI472464
EST:     TTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88672298|gb|CI726414.1|CI726414
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88545712|gb|CI475293.1|CI475293
EST:     GAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: GAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88674908|gb|CI729021.1|CI729021
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88528799|gb|CI457065.1|CI457065
EST:     ACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: ACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88543252|gb|CI473243.1|CI473243
EST:     CAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: CAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88533577|gb|CI461152.1|CI461152
EST:     ATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGGTAGGATTGGCAGGAACGTGATCATTGC
genomic: ATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88593371|gb|CI713325.1|CI713325
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88527862|gb|CI456051.1|CI456051
EST:     TTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88522531|gb|CI450297.1|CI450297
EST:     GGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: GGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88594662|gb|CI714620.1|CI714620
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88665680|gb|CI715836.1|CI715836
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|86536423|gb|CI176629.1|CI176629
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88459656|gb|CI521916.1|CI521916
EST:     GCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: GCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88522641|gb|CI449467.1|CI449467
EST:     CACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: CACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88675967|gb|CI730080.1|CI730080
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88670938|gb|CI725054.1|CI725054
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88675572|gb|CI729685.1|CI729685
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88524243|gb|CI452140.1|CI452140
EST:     GTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: GTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88524516|gb|CI450433.1|CI450433
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGNACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88533228|gb|CI460776.1|CI460776
EST:     TCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88521829|gb|CI448994.1|CI448994
EST:     TGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88455436|gb|CI519457.1|CI519457
EST:     GCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGGTAGAATTGGCAGGAACGTGATCATTGC
genomic: GCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88522771|gb|CI450487.1|CI450487
EST:     ATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: ATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88542061|gb|CI471368.1|CI471368
EST:     TTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88545122|gb|CI474660.1|CI474660
EST:     GAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: GAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88548895|gb|CI478729.1|CI478729
EST:     TAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|15851496|gb|BI799772.1|BI799772
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|13420392|gb|AU174482.1|AU174482
EST:     GGCAAGGTCCCAATTGGTATAGGCGAGAACCCAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: GGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88563230|gb|CI493947.1|CI493947
EST:     GAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: GAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88673435|gb|CI727548.1|CI727548
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88531174|gb|CI459631.1|CI459631
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88530398|gb|CI458791.1|CI458791
EST:     AGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: AGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88954439|gb|CI718418.1|CI718418
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88674882|gb|CI728995.1|CI728995
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88563175|gb|CI493892.1|CI493892
EST:     GAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: GAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88954535|gb|CI718514.1|CI718514
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88537546|gb|CI464504.1|CI464504
EST:     ACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: ACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88531661|gb|CI460154.1|CI460154
EST:     AACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: AACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88672161|gb|CI726277.1|CI726277
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|15849701|gb|BI797977.1|BI797977
EST:     TTGTTTGAAGGCAAGGTCCCAA-TGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|89171826|gb|CI720885.1|CI720885
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|89173241|gb|CI721071.1|CI721071
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88533108|gb|CI460644.1|CI460644
EST:     GAGAACACAAAGATAAG                         GAACTGTATCATCAACATGAATGCTAGAATTGGCAGGGACGTGATCATTGC
genomic: GAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88544948|gb|CI472475.1|CI472475
EST:     GGTCCCAATTTGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: GGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88670305|gb|CI724421.1|CI724421
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|86601117|gb|CI356874.1|CI356874
EST:     GAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: GAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88594238|gb|CI714196.1|CI714196
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88540776|gb|CI468846.1|CI468846
EST:     AGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: AGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88904624|gb|CI711923.1|CI711923
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88908828|gb|CI714970.1|CI714970
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATNGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88669804|gb|CI723920.1|CI723920
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88521573|gb|CI449276.1|CI449276
EST:     TAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88455256|gb|CI519277.1|CI519277
EST:     AACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: AACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88667215|gb|CI715373.1|CI715373
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88594530|gb|CI714488.1|CI714488
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88543439|gb|CI473447.1|CI473447
EST:     GGTCCCAATTGGTATAGGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: GGTCCCAATTGGTATA-GGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88972289|gb|CI717030.1|CI717030
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|15849119|gb|BI797395.1|BI797395
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACAC-AAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88524464|gb|CI450377.1|CI450377
EST:     TTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88674469|gb|CI728582.1|CI728582
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88534955|gb|CI463719.1|CI463719
EST:     ACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: ACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|86597373|gb|CI280510.1|CI280510
EST:     GTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: GTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
EST: gi|88667607|gb|CI722346.1|CI722346
EST:     TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAG                         GAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC
genomic: TTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccaca ... tgaattttagGAACTGTATCATCGACATGAATGCTAGAATTGGCAGGAACGTGATCATTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCAATATGAAACTGAAGAAGAAACTTCAAAGCTATTGTTTGAAGGCAAGGTCCCAATTGGTATAGGCGAGAACACAAAGATAAGgtgagccacatctggactaatgcttacatattactgtccttacctggcaatatcgtgtttccaaatgtatgagaccttcgtttcatgaattttag

- - - - - - - - - - - - - - - - - - -  TTGAAG