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CTCAGCGGCTGCAGCATTGGCGGATGAAGCTAGGTCAATGGATCTCGCTGATCGTTATTTAAACAGCGAGTGTGTTATGCAGATGCTCCAAGCTGACCAGgtacaataataattgattatatgcgtatcagaactttcttctgttacagtctcactagcctttctgaaaaaaaagaaacccttttctactgcagtgtgctccaagctgtcctctgttatttggttatagtatatatttcaactgcttattttgtaatttgtgaag
species | Oryza sativa |
transcript | LOC_Os01g43030.2 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: ATCGTTATTTAAACAGCGAGTGTGTTATGCAGATGCTCCAAGCTGACCAG GTTGGTCTAGCTGAAAAGACAGCTGTTTTGTTTACTAAGGACGGCGATCAGEST: gi|3761437|gb|C98685.1|C98685
genomic: ATCGTTATTTAAACAGCGAGTGTGTTATGCAGATGCTCCAAGCTGACCAGgtacaataat ... atttgtgaagGTTGGTCTAGCTGAAAAGACAGCTGTTTTGTTTACTAAGGACGGCGATCAG
EST: ATCGTTATTTAAACAGCGAGTGTGTTATGCAGATGCTCCAAGCTGACCAG GTTGGTCTAGCTGAAAAGACAGCTGTTTTGTTTACTAAGGACGGCGATCAGEST: gi|29643975|gb|CB648982.1|CB648982
genomic: ATCGTTATTTAAACAGCGAGTGTGTTATGCAGATGCTCCAAGCTGACCAGgtacaataat ... atttgtgaagGTTGGTCTAGCTGAAAAGACAGCTGTTTTGTTTACTAAGGACGGCGATCAG
EST: ATCGTTATTTAAACAGCGAGTGTGTTATGCAGATGCTCCAAGCTGACCAG GTTGGTCTAGCTGAAAAGACAGCTGTTTTGTTTACTAAGGACGGCGATCAGEST: gi|29635310|gb|CB640319.1|CB640319
genomic: ATCGTTATTTAAACAGCGAGTGTGTTATGCAGATGCTCCAAGCTGACCAGgtacaataat ... atttgtgaagGTTGGTCTAGCTGAAAAGACAGCTGTTTTGTTTACTAAGGACGGCGATCAG
EST: ATCGTTATTTAAACAGCGAGTGTGTTATGCAGATGCTCCAAGCTGACCAG GTTGGTCTAGCTGAAAAGACAGCTGTTTTGTTTACTAAGGACGGCGATCAG
genomic: ATCGTTATTTAAACAGCGAGTGTGTTATGCAGATGCTCCAAGCTGACCAGgtacaataat ... atttgtgaagGTTGGTCTAGCTGAAAAGACAGCTGTTTTGTTTACTAAGGACGGCGATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCAGCGGCTGCAGCATTGGCGGATGAAGCTAGGTCAATGGATCTCGCTGATCGTTATTTAAACAGCGAGTGTGTTATGCAGATGCTCCAAGCTGACCAGgtacaataataattgattatatgcgtatcagaactttcttctgttacagtctcactagcctttctgaaaaaaaagaaacccttttctactgcagtgtgctccaagctgtcctctgttatttggttatagtatatatttcaactgcttattttgtaatttgtgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA