1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GAACAAAGAAGATATGATTTGCTCCTGTGATGGTGATGGTGAAGTCCGCAGCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatgcaacttcatgtgtttcatggtatcttctgctttaacattcaacttctgatgcttgtctctgtttccaatcatttttgtcccaacag
species | Oryza sativa |
transcript | LOC_Os01g42260.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GAGCATAAATAATGGTAGCTGCTTGACCTTTGTTAAGGTCTTTAAG GGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCAEST: gi|29681692|gb|CB677967.1|CB677967
genomic: GAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatg ... gtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCA
EST: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAG GGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCAEST: gi|4714252|gb|AU058219.1|AU058219
genomic: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatg ... gtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCA
EST: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAG GGAGGTGCTACTCAGATGCGATTTCAACNTCAAAAGGGAAAATATCTTGCAEST: gi|86430973|gb|CI083396.1|CI083396
genomic: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatg ... gtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCA
EST: AGGTCTTTAAG GGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCAEST: gi|58608277|gb|CK036310.1|CK036310
genomic: AGGTCTTTAAGgtatgcaatg ... gtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCA
EST: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAG GGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCAEST: gi|58682276|gb|CK070963.1|CK070963
genomic: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatg ... gtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCA
EST: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAG GGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCAEST: gi|33690021|gb|CF318260.1|CF318260
genomic: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatg ... gtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCA
EST: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAG GGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGAAAAATATCTTGCAEST: gi|58604540|gb|CK015068.1|CK015068
genomic: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatg ... gtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCA
EST: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAG GGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCAEST: gi|16575961|gb|BI803257.1|BI803257
genomic: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatg ... gtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCA
EST: CCTGACCTTTGTTAA-GTCTTTAAG GGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTGGCAEST: gi|29673281|gb|CB669556.1|CB669556
genomic: CCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatg ... gtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCA
EST: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAG GGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCAEST: gi|218488081|gb|FG946110.1|FG946110
genomic: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatg ... gtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCA
EST: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAG GGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCAEST: gi|29638960|gb|CB643969.1|CB643969
genomic: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatg ... gtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCA
EST: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAG GGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCAEST: gi|3107649|gb|D43389.1|D43389
genomic: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatg ... gtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCA
EST: GCTGGNGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAG GGGAGGT-CTACTCAGATGCGATTTEST: gi|38478243|gb|CF962376.1|CF962376
genomic: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatg ... gtcccaacagGG-AGGTGCTACTCAGATGCGATTT
EST: GCTGGAGCATAAATAATGGTGGCTGCCTGACCTTTGTTAAGGTCTTTAAG GGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCA
genomic: GCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatg ... gtcccaacagGGAGGTGCTACTCAGATGCGATTTCAACCTCAAAAGGGAAAATATCTTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACAAAGAAGATATGATTTGCTCCTGTGATGGTGATGGTGAAGTCCGCAGCTGGAGCATAAATAATGGTAGCTGCCTGACCTTTGTTAAGGTCTTTAAGgtatgcaatgcaacttcatgtgtttcatggtatcttctgctttaacattcaacttctgatgcttgtctctgtttccaatcatttttgtcccaacag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC