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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCAAGGGACACTTGAACGGGATGATGAGgtatatttaaggatgctagtttacccccatttattgcttttttgttcttttcacctggtattaagttcaatttgattaaaattcagtatagttcctaaat...

Basic information

species Oryza sativa
transcript LOC_Os01g40340.2
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88694640|gb|CI738678.1|CI738678
EST:     AATCAAGGGACACTTGAACGGGATGATGAG                         GATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
genomic: AATCAAGGGACACTTGAACGGGATGATGAGgtatatttaa ... ctcctttcagGATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
EST: gi|58691100|gb|CK079787.1|CK079787
EST:     AATCAAGGGACACTTGAACGGGATGATGAG                         GATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
genomic: AATCAAGGGACACTTGAACGGGATGATGAGgtatatttaa ... ctcctttcagGATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
EST: gi|29680847|gb|CB677122.1|CB677122
EST:     AATCAAGGGACACTTGAACGGGATGATGAG                         GATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
genomic: AATCAAGGGACACTTGAACGGGATGATGAGgtatatttaa ... ctcctttcagGATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
EST: gi|38473714|gb|CF957846.1|CF957846
EST:     AATCAAGGGACACTTGAACGGGATGATGAG                         GATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
genomic: AATCAAGGGACACTTGAACGGGATGATGAGgtatatttaa ... ctcctttcagGATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
EST: gi|58679221|gb|CK067908.1|CK067908
EST:     AATCAAGGGACACTTGAACGGGATGATGAG                         GATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
genomic: AATCAAGGGACACTTGAACGGGATGATGAGgtatatttaa ... ctcctttcagGATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
EST: gi|29680806|gb|CB677081.1|CB677081
EST:     AATCAAGGGACACTTGAACGGGATGATGAG                         GATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
genomic: AATCAAGGGACACTTGAACGGGATGATGAGgtatatttaa ... ctcctttcagGATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
EST: gi|88327344|gb|CI645125.1|CI645125
EST:     AATCAAGGGACACTTGAACGGGATGATGAG                         GATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
genomic: AATCAAGGGACACTTGAACGGGATGATGAGgtatatttaa ... ctcctttcagGATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA