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AATCAAGGGACACTTGAACGGGATGATGAGgtatatttaaggatgctagtttacccccatttattgcttttttgttcttttcacctggtattaagttcaatttgattaaaattcagtatagttcctaaat...
species | Oryza sativa |
transcript | LOC_Os01g40340.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: AATCAAGGGACACTTGAACGGGATGATGAG GATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGAEST: gi|58691100|gb|CK079787.1|CK079787
genomic: AATCAAGGGACACTTGAACGGGATGATGAGgtatatttaa ... ctcctttcagGATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
EST: AATCAAGGGACACTTGAACGGGATGATGAG GATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGAEST: gi|29680806|gb|CB677081.1|CB677081
genomic: AATCAAGGGACACTTGAACGGGATGATGAGgtatatttaa ... ctcctttcagGATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
EST: AATCAAGGGACACTTGAACGGGATGATGAG GATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGAEST: gi|88694640|gb|CI738678.1|CI738678
genomic: AATCAAGGGACACTTGAACGGGATGATGAGgtatatttaa ... ctcctttcagGATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
EST: AATCAAGGGACACTTGAACGGGATGATGAG GATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGAEST: gi|58679221|gb|CK067908.1|CK067908
genomic: AATCAAGGGACACTTGAACGGGATGATGAGgtatatttaa ... ctcctttcagGATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
EST: AATCAAGGGACACTTGAACGGGATGATGAG GATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGAEST: gi|29680847|gb|CB677122.1|CB677122
genomic: AATCAAGGGACACTTGAACGGGATGATGAGgtatatttaa ... ctcctttcagGATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
EST: AATCAAGGGACACTTGAACGGGATGATGAG GATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGAEST: gi|88327344|gb|CI645125.1|CI645125
genomic: AATCAAGGGACACTTGAACGGGATGATGAGgtatatttaa ... ctcctttcagGATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
EST: AATCAAGGGACACTTGAACGGGATGATGAG GATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
genomic: AATCAAGGGACACTTGAACGGGATGATGAGgtatatttaa ... ctcctttcagGATGTCTATTTTGATGATGAATCAGCAGAGGTCGTAATATCTTCACTGCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCAAGGGACACTTGAACGGGATGATGAGgtatatttaaggatgctagtttacccccatttattgcttttttgttcttttcacctggtattaagttcaatttgattaaaattcagtatagttcctaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taccccc