1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
GAATCACATTTTGGCTGCTGGTGAAGATAATCAGATTAAGTTCTGGGATGTTGATAATACAACCATGCTTAGCTCTACTGAAGCTGACGGAGGCTTACCGgttagtctatgttccctactgtgttaaacatttttttctcttttggtagtctaaaactgtgtacattctatcag
species | Oryza sativa |
transcript | LOC_Os01g15020.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TTGATAATACAACCATGCTTAGCTCTACTGAAGCTGACGGAGGCTTACCG GGTCTTCCACGGTTGAGGTTCAATAAAGAAGGCAATCTTCTTGCTGTTACTEST: gi|88717097|gb|CI740607.1|CI740607
genomic: TTGATAATACAACCATGCTTAGCTCTACTGAAGCTGACGGAGGCTTACCGgttagtctat ... attctatcagGGTCTTCCACGGTTGAGGTTCAATAAAGAAGGCAATCTTCTTGCTGTTACT
EST: TTGATAATACAACCATGCTTAGCTCTACTGAAGCTGACGGAGGCTTACCG GGTCTTCCACGGTTGAGGTTCAATAAAGAAGGCAATCTTCTTGCTGTTACTEST: gi|29630452|gb|CB635461.1|CB635461
genomic: TTGATAATACAACCATGCTTAGCTCTACTGAAGCTGACGGAGGCTTACCGgttagtctat ... attctatcagGGTCTTCCACGGTTGAGGTTCAATAAAGAAGGCAATCTTCTTGCTGTTACT
EST: TTGATAATACAACCATGCTTAGCTCTACTGAAGCTGACGGAGGCTTACCG GGTCTTCCACGGTTGAGGTTCAATAAAGAAGGCAATCTTCTTGCTGTTACTEST: gi|29626131|gb|CB631142.1|CB631142
genomic: TTGATAATACAACCATGCTTAGCTCTACTGAAGCTGACGGAGGCTTACCGgttagtctat ... attctatcagGGTCTTCCACGGTTGAGGTTCAATAAAGAAGGCAATCTTCTTGCTGTTACT
EST: TTGATAATACAACCATGCTTAGCTCTACTGAAGCTGACGGAGGCTTACCG GGTCTTCCACGGTTGAGGTTCAATAAAGAAGGCAATCTTCTTGCTGTTACTEST: gi|58668880|gb|CK057566.1|CK057566
genomic: TTGATAATACAACCATGCTTAGCTCTACTGAAGCTGACGGAGGCTTACCGgttagtctat ... attctatcagGGTCTTCCACGGTTGAGGTTCAATAAAGAAGGCAATCTTCTTGCTGTTACT
EST: TTGATAATACAACCATGCTTAGCTCTACTGAAGCTGACGGAGGCTTACCG GGTCTTCCACGGTTGAGGTTCAATAAAGAAGGCAATCTTCTTGCTGTTACTEST: gi|29628115|gb|CB633126.1|CB633126
genomic: TTGATAATACAACCATGCTTAGCTCTACTGAAGCTGACGGAGGCTTACCGgttagtctat ... attctatcagGGTCTTCCACGGTTGAGGTTCAATAAAGAAGGCAATCTTCTTGCTGTTACT
EST: TTGATAATACAACCATGCTTAGCTCTACTGAAGCTGACGGAGGCTTACCG GGTCTTCCACGGTTGAGGTTCAATAAAGEST: gi|29630393|gb|CB635402.1|CB635402
genomic: TTGATAATACAACCATGCTTAGCTCTACTGAAGCTGACGGAGGCTTACCGgttagtctat ... attctatcagGGTCTTCCACGGTTGAGGTTCAATAAAG
EST: TTGATAATACAACCATGCTTAGCTCTACTGAAGCTGACGGAGGCTTACCG GGTCTTCCACGGTTGAGGTTCAATAAAGAAGGCAATCTTCTTGCTGTTACTEST: gi|29625310|gb|CB630321.1|CB630321
genomic: TTGATAATACAACCATGCTTAGCTCTACTGAAGCTGACGGAGGCTTACCGgttagtctat ... attctatcagGGTCTTCCACGGTTGAGGTTCAATAAAGAAGGCAATCTTCTTGCTGTTACT
EST: TTGATAATACAACCATGCTTAGCTCTACTGAAGCTGACGGAGGCTTACCG GGTCTTCCACGGTTGAGGTTCAATAAAGAAGGCAATCTTCTTGCTGTTACT
genomic: TTGATAATACAACCATGCTTAGCTCTACTGAAGCTGACGGAGGCTTACCGgttagtctat ... attctatcagGGTCTTCCACGGTTGAGGTTCAATAAAGAAGGCAATCTTCTTGCTGTTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATCACATTTTGGCTGCTGGTGAAGATAATCAGATTAAGTTCTGGGATGTTGATAATACAACCATGCTTAGCTCTACTGAAGCTGACGGAGGCTTACCGgttagtctatgttccctactgtgttaaacatttttttctcttttggtagtctaaaactgtgtacattctatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA