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ATTGGGATGCCTGTCTGTCCACCTGGATACACCTCAATGCTTTTCTGCAGAAATATATGCAGTTGACTTAAACGTTGCAGGAGCACAGGAAGATCTTAAGgtttgcacagaatcatatgttgtcaactggttgttttgcttatcattcttcaaacttttgatgcaccagtagttcaatcattctgttactaagacagaaa...
species | Oryza sativa |
transcript | LOC_Os12g06810.4 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: AAATATATGCAGTTGACTTAAACGTTGCAGGAGCACAGGAAGATCTTAAG ATTAATTTGGCTCAGGAGACTCTCCGTGGTTTGTTAGTTCATTGGAGTAAAEST: gi|88225951|gb|CI225867.1|CI225867
genomic: AAATATATGCAGTTGACTTAAACGTTGCAGGAGCACAGGAAGATCTTAAGgtttgcacag ... aaaaatgcagATTAATTTGGCTCAGGAGACTCTCCGTGGTTTGTTAGTTCATTGGAGTAAA
EST: AAATATATGCAGTTGACTTAAACGTTGCAGGAGCACAGGAAGATCTTAAG ATTAATTTGGCTCAGGAGACTCTCCGTGGTTTGTTAGTTCATTGGAGTAAEST: gi|33796033|gb|CF323884.1|CF323884
genomic: AAATATATGCAGTTGACTTAAACGTTGCAGGAGCACAGGAAGATCTTAAGgtttgcacag ... aaaaatgcagATTAATTTGGCTCAGGAGACTCTCCGTGGTTTGTTAGTTCATTGGAGTAA
EST: AAATATATGCAGTTGACTTAAACGTTGCAGGAGCACAGGAAGATCTTAAG ATTAATTTGGCTCAGGAGACTCTCCGTGGTTTGTTAGTTCATTGGAGTNNN
genomic: AAATATATGCAGTTGACTTAAACGTTGCAGGAGCACAGGAAGATCTTAAGgtttgcacag ... aaaaatgcagATTAATTTGGCTCAGGAGACTCTCCGTGGTTTGTTAGTTCATTGGAGTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGGGATGCCTGTCTGTCCACCTGGATACACCTCAATGCTTTTCTGCAGAAATATATGCAGTTGACTTAAACGTTGCAGGAGCACAGGAAGATCTTAAGgtttgcacagaatcatatgttgtcaactggttgttttgcttatcattcttcaaacttttgatgcaccagtagttcaatcattctgttactaagacagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA