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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCGAGACTTAAAACCAGAGAATATCTTACTTCATAGAGATGGGCACATCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAGgtaataatttgataaatctcttctcataaaagtaatattaattcatgaacctctttctcttccaaaaagaatcataaaacgtcacaattataatgcgcta...

Basic information

species Oryza sativa
transcript LOC_Os12g01140.4
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g01140.5 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G001457_T02 (Zea mays), 5'ss of exon 17
ATACCGAGACTTAAAACCAGAGAATATCTTACTTCATAGAGATGGGCACATCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAGgtaata--atttgataaatctcttctcataaa--agtaatattaattcatgaacctctttc-----tcttccaaaaagaatcataaaacgtcacaattataatgcgcta-
 ||| |||||||||| |||||||| || ||||||||||||||||||||||| ||  | |||||||| |||||||||||  | ||||| ||| |||| || |||||   | || || ||| |    | ||  |  | | ||    |||  |  | ||| ||      | || |  |      | |||  |   |  ||| |  |  | || 
CTACAGAGACTTAAAGCCAGAGAACATTTTACTTCATAGAGATGGGCACATTTCATTGACAGACTTTGATTTGTCTTGCTTGACATCCTGCCGACCACAAgtaatgtcacttcattaatataccttaatggacaattcatggctattagtttaactccttggtctatttttcttagttgcacttaagtcactattattgttgtttgatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66913937|gb|CX100785.1|CX100785
EST:     TCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAG                         GTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
genomic: TCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAGgtaataattt ... tatttggtagGTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
EST: gi|29623925|gb|CB628936.1|CB628936
EST:     TCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAG                         GTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
genomic: TCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAGgtaataattt ... tatttggtagGTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
EST: gi|86908120|gb|CI300633.1|CI300633
EST:     TCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAG                         GTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
genomic: TCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAGgtaataattt ... tatttggtagGTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
EST: gi|29630467|gb|CB635476.1|CB635476
EST:     CTTGCAGACCGCAG                         TTCTTTCTTCCCGAAAATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
genomic: CTTGCAGACCGCAGgtaataattt ... tatttggtagGTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
EST: gi|29622723|gb|CB627734.1|CB627734
EST:     TCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAG                         GTCTTTCTTCCCGAAAATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
genomic: TCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAGgtaataattt ... tatttggtagGTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
EST: gi|88299110|gb|CI570080.1|CI570080
EST:     GTCTTGTCTAACATCTTGCAGACCGGAG                         GTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
genomic: GTCTTGTCTAACATCTTGCAGACCGCAGgtaataattt ... tatttggtagGTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
EST: gi|27334351|gb|CA882802.1|CA882802
EST:     TCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAG                         GTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
genomic: TCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAGgtaataattt ... tatttggtagGTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
EST: gi|29630120|gb|CB635129.1|CB635129
EST:     TCTCCCTTACAGATTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAG                         GTCTTTCTTCCCGAAAATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
genomic: TCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAGgtaataattt ... tatttggtagGTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
EST: gi|58695041|gb|CK083728.1|CK083728
EST:     TCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAG                         GTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
genomic: TCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAGgtaataattt ... tatttggtagGTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
EST: gi|29623926|gb|CB628937.1|CB628937
EST:     TCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAG                         GTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
genomic: TCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAGgtaataattt ... tatttggtagGTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
EST: gi|29641400|gb|CB646407.1|CB646407
EST:     TCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAG                         GTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
genomic: TCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAGgtaataattt ... tatttggtagGTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
EST: gi|33680724|gb|CF308963.1|CF308963
EST:     TCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAG                         GTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
genomic: TCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAGgtaataattt ... tatttggtagGTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
EST: gi|29622724|gb|CB627735.1|CB627735
EST:     TCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAG                         GTCTTTCTTCCCGAAAATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
genomic: TCTCCCTTACAGACTTCGATTTGTCTTGTCTAACATCTTGCAGACCGCAGgtaataattt ... tatttggtagGTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
EST: gi|29677072|gb|CB673347.1|CB673347
EST:     TTGCAGACCGCAG                         GTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT
genomic: TTGCAGACCGCAGgtaataattt ... tatttggtagGTCTTTCTTCCCGAAGATGCTGATGAGAAAAAAGGGAGAAAAAACGGGAGT