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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTCAATGGTCTTCTATGAAAACTGTGGCCTGCAAAATCTTTATGACATAGTACGATATTGTCAGgtaaattcccagtgctccgccaaaatgaataatatttgattttcttaattctttataccctcaacatagattttgttagtctcagttccgccccttttct...

Basic information

species Oryza sativa
transcript LOC_Os11g48090.3
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g48090.4 (Oryza sativa), 5'ss of exon 14
lower sequence: GLYMA09G34860.1 (Glycine max), 5'ss of exon 13
AGTTCAATGGTCTTCTATGAAAACTGTGGCCTGCAAAATCTTTATGACATAGTACGATATTGTCAGgtaaattcccagtgctccgccaaaatg--aataatatttgattttcttaat---tctttataccctcaacatagattttgttagtctcagttccgccccttttct
|| |||||||||||||| ||||| |  || ||||| ||||| |||||||| ||||||||||||| ||||| || |   ||        || |     |  || ||||| | || | |   |  |||| |  ||     |  ||||   |||   |     |          
AGCTCAATGGTCTTCTACGAAAATTCAGGACTGCAGAATCTCTATGACATTGTACGATATTGTCTGgtaattttcttctgtgatatttaacttttgctggtaattgatctcctcagtcaatacttattcattccttcaaagtttttaaagttagaacattgatttc-----

upper sequence: LOC_Os11g48090.4 (Oryza sativa), 5'ss of exon 14
lower sequence: Vv02s0087g00070.t01 (Vitis vinifera), 5'ss of exon 13
AGTTCAATGGTCTTCTATGAAAACTGTGGCCTGCAAAATCTTTATGACATAGTACGATATTGTCAGgta-aattcccagtgctccgccaaaatgaataatatttgattttcttaattctttataccctcaacatagattttgttagtctcagttccgccccttttct
|||||||||||||||||||| || | |||  |||||||||| ||||||||||||| ||||||||||||| | |||  | |  |  |    ||   |||| |||    |||   |     ||| | | || |      ||    |  |   | ||       | || |
AGTTCAATGGTCTTCTATGAGAATTCTGGATTGCAAAATCTCTATGACATAGTACAATATTGTCAGgtatagttcttaatcttgtgaagcaagtcataa-attactgtttagaagagaattaaaacttccaagctttttacactcatgcaattttttattttatttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29682976|gb|CB679251.1|CB679251
EST:     ATGAAAACTGTGGCCTGCAAAATCTTTATGACATAGTACGATATTGTCAG                         TCTAAGAGGAGCTGTCGTCGTGGTGCTTTCTTCCGGCATTTTGGAGAGGCT
genomic: ATGAAAACTGTGGCCTGCAAAATCTTTATGACATAGTACGATATTGTCAGgtaaattccc ... ctgtttatagTCTAAGAGGAGCTGTCGTCGTGGTGCTTTCTTCCGGCATTTTGGAGAGGCT
EST: gi|58596568|gb|CK007096.1|CK007096
EST:     ATGAAAACTGTGGCCTGCAAAATCTTTATGACATAGTACGATATTGTCAG                         TCTAAGAGGAGCTGTCGTCGTGGTGCTTTCTTCCGGCATTTTGGAGAGGCT
genomic: ATGAAAACTGTGGCCTGCAAAATCTTTATGACATAGTACGATATTGTCAGgtaaattccc ... ctgtttatagTCTAAGAGGAGCTGTCGTCGTGGTGCTTTCTTCCGGCATTTTGGAGAGGCT
EST: gi|88289894|gb|CI525226.1|CI525226
EST:     ATGAAAACTGTGGCCTGCAAAATCTTTATGACATAGTACGATATTGTCAG                         TCTAAGAGGAGCTGTCGTCGTGGTGCTTTCTTCCGGCATTTTGGAGAGGCT
genomic: ATGAAAACTGTGGCCTGCAAAATCTTTATGACATAGTACGATATTGTCAGgtaaattccc ... ctgtttatagTCTAAGAGGAGCTGTCGTCGTGGTGCTTTCTTCCGGCATTTTGGAGAGGCT