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GGCCGGATACGACTCCTTCTATCAGGAGCAGCACCTTTGCCAAGACACGTCGAAGAATTCATGCGGGTTACCAGCTGCAGTGTACTTGTACAAGGATATGgtgagttccaaaattcatgtggaaaatgtagactttaacctggacccatcataaccatatagcaacttagcatggttagttagttggtcctgattcagtt...
species | Oryza sativa |
transcript | LOC_Os11g35400.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CGAAGAATTCATGCGGGTTACCAGCTGCAGTGTACTTGTACAAGGATATG GGCTAACAGAGAGTTGCTCAGGATGCTTCACATCAATCGCCAATGTTTTCTEST: gi|66947111|gb|AU311955.1|AU311955
genomic: CGAAGAATTCATGCGGGTTACCAGCTGCAGTGTACTTGTACAAGGATATGgtgagttcca ... tggtatgcagGGCTAACAGAGAGTTGCTCAGGATGCTTCACATCAATCGCCAATGTTTTCT
EST: CTGCAGTGTACTTGTACAAGGATATG GGCTAACAGAGAGTTGCTCAGGATGCTTCACATCAATCGCCAATGTTTTCTEST: gi|58659138|gb|CK047818.1|CK047818
genomic: CTGCAGTGTACTTGTACAAGGATATGgtgagttcca ... tggtatgcagGGCTAACAGAGAGTTGCTCAGGATGCTTCACATCAATCGCCAATGTTTTCT
EST: CGAAGAATTCATGCGGGTTACCAGCTGCAGTGTACTTGTACAAGGATATG GGCTAACAGAGAGTTGCTCAGGATGCTTCACATC
genomic: CGAAGAATTCATGCGGGTTACCAGCTGCAGTGTACTTGTACAAGGATATGgtgagttcca ... tggtatgcagGGCTAACAGAGAGTTGCTCAGGATGCTTCACATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCGGATACGACTCCTTCTATCAGGAGCAGCACCTTTGCCAAGACACGTCGAAGAATTCATGCGGGTTACCAGCTGCAGTGTACTTGTACAAGGATATGgtgagttccaaaattcatgtggaaaatgtagactttaacctggacccatcataaccatatagcaacttagcatggttagttagttggtcctgattcagtt
- - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG