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GAAATTCAGCTGTTCAAGCTATATCCCTACTCTTGAAGAAGGGTGTACAGGAAACAAACATTATCTTTCTGAATCTTATATCAgtaagtctactgaagtgctttggtttcatttgttttgagtcttaatttattcatttgtatggattgttgcttttttgaagctcataatctgatgatttgg...
species | Oryza sativa |
transcript | LOC_Os11g16370.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TGAAGAAGGGTGTACAGGAAACAAACATTATCTTTCTGAATCTTATATCA GCTCCCCAAGGAGTGCATGTCCTTAGCAAGAGATTTCCGAGAGTCAAGATCEST: gi|88506922|gb|CI434428.1|CI434428
genomic: TGAAGAAGGGTGTACAGGAAACAAACATTATCTTTCTGAATCTTATATCAgtaagtctac ... attgttgcagGCTCCCCAAGGAGTGCATGTCGTTAGCAAGAGATTTCCGAGAGTCAAGATC
EST: TGAAGAAGGGTGTACAGGAAACAAACATTATCTTTCTGAATCTTATATCA GCTCCCCAAGGAGTGCATGTCGTTAGCAAGAGATTTCCGAGAGTCAAGATCEST: gi|16753858|gb|BM038237.1|BM038237
genomic: TGAAGAAGGGTGTACAGGAAACAAACATTATCTTTCTGAATCTTATATCAgtaagtctac ... attgttgcagGCTCCCCAAGGAGTGCATGTCGTTAGCAAGAGATTTCCGAGAGTCAAGATC
EST: TGAAGAAGGGTGTACAGGAAACAAACATTATCTTTCTGAATCTTATATCA GCTCCCCAAGGAGTGCATGTCGTTAGCAAGAGATTTCCGAGAGTCAAGATCEST: gi|86524341|gb|CI164547.1|CI164547
genomic: TGAAGAAGGGTGTACAGGAAACAAACATTATCTTTCTGAATCTTATATCAgtaagtctac ... attgttgcagGCTCCCCAAGGAGTGCATGTCGTTAGCAAGAGATTTCCGAGAGTCAAGATC
EST: TGAAGAAGGGTGTACAGGAAACAAACATTATCTTTCTGAATCTTATATCA GCTCCCCAAGGAGTGCATGTCGTTAGCAAGAGATTTCCGAGAGTCAAGATCEST: gi|88436771|gb|CI521522.1|CI521522
genomic: TGAAGAAGGGTGTACAGGAAACAAACATTATCTTTCTGAATCTTATATCAgtaagtctac ... attgttgcagGCTCCCCAAGGAGTGCATGTCGTTAGCAAGAGATTTCCGAGAGTCAAGATC
EST: CTGAATCTTATATCA GCTCCCCAAGGAGTGCATGTCGTTAGCAAGAGATTTCCGAGAGTCAAGATCEST: gi|88489079|gb|CI426350.1|CI426350
genomic: CTGAATCTTATATCAgtaagtctac ... attgttgcagGCTCCCCAAGGAGTGCATGTCGTTAGCAAGAGATTTCCGAGAGTCAAGATC
EST: CAGGAAACAAACATTATCTTTCTGAATCTTATATCA GCTCCCCAAGGAGTGCATGTCGTTAGCAAGAGATTTCCGAGAGTCAAGATCEST: gi|88475045|gb|CI412316.1|CI412316
genomic: CAGGAAACAAACATTATCTTTCTGAATCTTATATCAgtaagtctac ... attgttgcagGCTCCCCAAGGAGTGCATGTCGTTAGCAAGAGATTTCCGAGAGTCAAGATC
EST: ACAAACATTATCTTTCTGAATCTTATATCA GCTCCCCAAGGAGTGCATGTCGTTAGCAAGAGATTTCCGAGAGTCAAGATCEST: gi|88511245|gb|CI438751.1|CI438751
genomic: ACAAACATTATCTTTCTGAATCTTATATCAgtaagtctac ... attgttgcagGCTCCCCAAGGAGTGCATGTCGTTAGCAAGAGATTTCCGAGAGTCAAGATC
EST: AAGGGTGTACAGGAAACANACATTATCTTTCTGAATCTTATATCA GCTCCCCAAGGAGTGCATGTCGTTAGCAAGAGATTTCCGAGAGTCAAGATC
genomic: AAGGGTGTACAGGAAACAAACATTATCTTTCTGAATCTTATATCAgtaagtctac ... attgttgcagGCTCCCCAAGGAGTGCATGTCGTTAGCAAGAGATTTCCGAGAGTCAAGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATTCAGCTGTTCAAGCTATATCCCTACTCTTGAAGAAGGGTGTACAGGAAACAAACATTATCTTTCTGAATCTTATATCAgtaagtctactgaagtgctttggtttcatttgttttgagtcttaatttattcatttgtatggattgttgcttttttgaagctcataatctgatgatttgg
- - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - AAGAAG