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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagttgctccacttcagtagatttctttcaatatgttttccttgtaatgtacttgttcagtttgcatctttgcattattatgcccaagtatgctgacatgacatctttgcattacaatacag

Basic information

species Oryza sativa
transcript LOC_Os10g32550.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G111477_T01 (Zea mays), 5'ss of exon 2
ATCGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagttgctccacttcagtagatttctttcaatatgttttccttgtaatgtacttgttcagtttgcatctttgcattattatgcccaagtatgctgacatgacatctttgcattaca-atacag
|| || ||||| || ||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||      ||   || || | ||  |    ||||     | ||| |  | || | ||| |    | | | |  |    |  |  |||   |||||||      | |||||||  |||  | || |||
ATTGGGGGAGCTAGCGAAGCAGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCACTGAATGCTACTAAAGCTGCTGTTGAAGAGGGTATTGTACCAGgtaa-----tgtatcatttgaatatttgatgttcacgggatgttcatgctgatttcctt-tgtgttattcctactgatctcctgttgcatcagtatgcctgatagtcatcttta-attgtatatgcag

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G111477_T02 (Zea mays), 5'ss of exon 2
ATCGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagttgctccacttcagtagatttctttcaatatgttttccttgtaatgtacttgttcagtttgcatctttgcattattatgcccaagtatgc-tgacatgacatctttgcattacaatacag
|| || ||||| || ||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||      ||   || || | ||  |    ||||     | ||| |  | || | ||| |    | | | |  |    |  |  |||   ||||||| ||| |                        
ATTGGGGGAGCTAGCGAAGCAGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCACTGAATGCTACTAAAGCTGCTGTTGAAGAGGGTATTGTACCAGgtaa-----tgtatcatttgaatatttgatgttcacgggatgttcatgctgatttcctt-tgtgttattcctactgatctcctgttgcatcagtatgcctgatagt----------------------

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G416120_T01 (Zea mays), 5'ss of exon 13
ATCGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgta-tgcagttgctccacttcagtagatt-----tctttcaatatgttttccttgtaatgtactt------gttcagtttgcatc----tttgcatta-ttatgcccaa---------------gtatgctgacatgacatctttgcattaca-atacag
|| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||| ||||||||||||| || |     |  | ||   | |        | |||       ||| |  ||| || | ||        |||   |||||||    ||||  ||| |||| ||  |               ||||||      | ||   ||  |||    || |||
ATTGGAGGAGCCAGCGAAGCAGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCACTGAATGCTACTAAAGCTGCTGTTGAAGAGGGCATTGTACCAGgtaatgtatcaattaaaatttcatggggggggggtgtttatgctgatttcctgtgttatttgctcctactgattcctgttgcatcagtatttgtgttagttattcctgatttcctgttgcgtcagtatgcccgggagtcaatctttaattgtgtatgcag

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GLYMA20G19980.1 (Glycine max), 5'ss of exon 14
ATCGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagttgctccacttcagtagatttctttcaatatgttttccttgtaatgtacttgttcagtttgcatctttgcattattatgcccaagtatgctgacatgacatctttgcattacaatacag
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||| || ||||| || || || ||||   |  |  || |||  |  ||      ||||||  |||    ||  ||| |      |||| |  |  ||||   || || |  |   |||                                
ATTGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACTGATGCATTAAATGCAACTAAGGCTGCTGTAGAGGAGGGCATAGTGCCTGgta---aaata-tcaactctaacag------ttcaatg-gttagttttacaatct--caaatcagatc-cgactttaatttgttctcgcactgtag-------------------------------

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GLYMA10G33680.1 (Glycine max), 5'ss of exon 14
ATCGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagttgctccacttcagtagatttctttcaatatgttttccttgtaatgtacttgttcagtttgcatctttgcattattatgcccaagtatgctgacatgacatctttgcattacaatacag
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| || || || ||||| || ||||| || ||||||||||     ||      |    | || | |      ||   |  | ||  |  | |  ||||||| |   ||  ||||   | || |||     | ||| |                           
ATTGGAGGAGCCAGTGAGGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCCTTAAATGCAACCAAGGCAGCTGTAGAGGAGGGCATAGTACCAGgtagattatta----gcactggcagttgt------atgcttagttctaattctatg-ttgttcaat---caaatttgatgtgttgtgctt---tgtgcag---------------------------

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GLYMA10G25630.1 (Glycine max), 5'ss of exon 14
ATCGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagttgctccacttcagtagatttctt-tcaatatgttttccttgtaatgtacttgttcagtttgcatctttgcattattatgcccaagtatgctgacatgacatctttgcattacaatacag
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||| || || || |||||| ||||||   |  |  || |    | ||| |   |  | | | |      ||   |    |   |   |   |   |  | |||||                                              
ATTGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCCTTAAATGCAACTAAGGCTGCTGTAGAGGAAGGCATTGTATCAGgta---aaata-tcaatgctaatagttcaatggttagttttacaatctcaaatcagatccgactataatttgttctcgcattgcag------------------------------------------

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GLYMA20G33910.1 (Glycine max), 5'ss of exon 14
ATCGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagttgctccacttcagtagatttctttcaatatgttttccttgtaatgtacttgttcagtttgcatctttgcattattatgcccaagtatgctgacatgacatctttgcattacaatacag
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| || || || ||||| || ||||| || ||||| ||||     ||    |||||  | || | | |    |   ||| |  || ||      |   |||  ||  ||   ||   |  | ||| ||                                    
ATTGGAGGAGCCAGTGAGGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCCTTAAATGCAACCAAGGCAGCTGTAGAGGAGGGCATAGTACCTGgtagattatta--gcactt--gcagttgtatgctga---gttctaattctacgtcgttcaatcaaatttgatg--tgttgtgctttgcgcag-----------------------------------

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 14
lower sequence: AT3G23990.1 (Arabidopsis thaliana), 5'ss of exon 12
ATCGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagttgctccacttcagtagatttctttcaatatgttttccttgtaatgtacttgttcagtttgcatctttgcattattatgcccaagtatgctgacatgacatctttgcattacaatacag
|| |||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| || || |||||||||||| |||||||||||    |  |||| |   | ||| |  ||   |||    |     ||    ||  || | |     ||  |    |   ||                                           
ATTGGAGGAGCAAGTGAAGCTGAAGTTGGTGAGAAGAAAGACAGAGTGACAGATGCTTTGAATGCCACTAAAGCAGCAGTTGAAGAGGGTATTTTACCAGgtatgt--ctcttccagtgaggaagactctttgatatagtgctaaaaagtttgctatgtgctaaagaaacaaatcaaaacacttgcag---------------------------------------

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 14
lower sequence: AT2G33210.1 (Arabidopsis thaliana), 5'ss of exon 13
ATCGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagttgctccacttcagtagatttctttcaatatgttttccttgtaatgtacttgttcagtttgcatctttgcattattatgcccaagtatgctgacatgacatctttgcattacaatacag
|| |||||||| |||||  | |||||| |||| ||||| |||||||| || |||||  | |||||||||||||| || || || ||||||||||| ||||||||  |  |   |||  ||   |      |||   |   |       | ||  | | ||   ||     |   ||  |||| | ||      | | | |                           
ATTGGAGGAGCAAGTGAGACAGAAGTTAGTGAAAAGAAAGATAGAGTAACGGATGCTCTAAATGCCACTAAAGCAGCCGTAGAGGAGGGTATTGTTCCAGgtata-atctatcccaaatctaaaacaaaatttggttgaatcccttaagaaaattgcgtgagaag-----agaattatattactttgtgtgtat-tacag---------------------------

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 14
lower sequence: Vv05s0051g00340.t01 (Vitis vinifera), 5'ss of exon 14
ATCGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagttgctccacttcagtagatttctttcaatatgttttccttgtaatgtacttgttcagtttgcatctttgcattattatgcccaagtatgctgacatgacatctttgcattacaatacag
|| |||||||| ||||||||||||||| |||||||||| ||||| || ||||||||  | ||||| ||||| || ||||| ||||| || |||||||||||||   || |  |    ||   |   ||||  |      |||     |  |  | | |||  ||  |  | || |   |||  |||   ||                                    
ATAGGAGGAGCTAGTGAAGCTGAAGTTAGTGAGAAGAAAGATAGGGTTACAGATGCTCTAAATGCTACTAAGGCAGCTGTAGAAGAAGGAATTGTACCAGgta---agctttttggtttgcat---tttcccttg----gttactactcaaccggagttggacaaat--cttcataaaatttatatttgcag-----------------------------------

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 14
lower sequence: PP1S44_339V6.1 (Physcomitrella patens), 5'ss of exon 13
ATCGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagttgctccacttcagtagatttctttcaatatgttttccttgtaatgtacttgttcagtttgcatctttgcattattat-gcccaagtatgctgacatgacatctttgcattacaatacag
||||||||| | |||||||  |||||   |||||| || ||| | || || ||||| ||||||||||||||||| |||||||||||||| |||||||| |||| |  |||   |    ||| |   | | |  |||      ||  ||||    | |  ||||| ||    | |  |     | || |   ||||  ||||                           
ATCGGAGGAACTAGTGAAGTGGAAGTCAATGAGAAAAAAGATCGTGTAACGGATGCCTTGAATGCCACTAAAGCAGCTGTGGAAGAGGGCATTGTACCCGgtaag--gtt--ccaggatcattttctctgtaacaaacacagttgattgtctcttccacgttcacttctggtttcggtgaggtaattgatgaagttagctgctt------------------------

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 14
lower sequence: PP1S52_245V6.1 (Physcomitrella patens), 5'ss of exon 14
ATCGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagttgctccacttcagtagatttctttcaatatgttttccttgtaatgtacttgttcagtttgcatctttgcattattatgcccaagtatgctgacatgacatctttgcattacaatacag
||||||||||| || |||| ||| ||  |||| ||||| ||| | || || |||||| ||||||| |||||||||||||| || ||||| |||||||| ||||||   |||    ||||  | |  |||   |     |||  |||||     | |   |||   ||   |||  |  |  | |  |   ||  | |    ||  |                     
ATCGGAGGAGCAAGCGAAGTTGAGGTGAGTGAAAAGAAAGATCGTGTTACTGATGCACTGAATGCTACTAAAGCTGCTGTCGAGGAGGGGATTGTACCTGgtatg--attgtcgaacttttg-aattttgacttgcgttgtgatcctt----cgcatcagttgttttgaaatccgttaagaagttagtttaaaaacgtgatcaatat--------------------

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 14
lower sequence: PP1S378_9V6.2 (Physcomitrella patens), 5'ss of exon 13
ATCGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagttgctccacttcagtagatttctttcaatatgttttccttgtaatgtacttgttcagtttgcatctttgcattattatgcccaagtatgctgacatgacatctttgcattacaatacag
|| |||||||| ||||||| ||| ||| |||||||||| ||  | || || ||||||||||||||||| ||||| ||||| || ||||| ||||| || ||||||       || |  | | ||  | | |||    ||   |  |||     |  ||  ||   | |       ||  || |  |||   ||  | |    || |                     
ATTGGAGGAGCTAGTGAAGTTGAGGTTAGTGAGAAGAAAGACCGTGTTACTGATGCATTGAATGCCACCAAAGCCGCTGTTGAGGAGGGCATTGTTCCTGgtatgt------tcgagattactaactcttttttgtgatccgtaacttagtccg-gctcattgtatata-gcgaatgttttctcttgctttaggttccgttgattatt-------------------

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 14
lower sequence: PP1S149_289V6.1 (Physcomitrella patens), 5'ss of exon 13
ATCGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagttgctccacttcagtagatttctttcaatatgttttccttgtaatgtacttgttcagtttgcatctttgcattattatgcccaagtatgctgacatgacatctttgcattacaatacag
||||||||||| |||||||  || ||    |||||||| ||  | || || ||||||||||| ||||||||||||||||| || ||||||||||| || ||||||   |    | |  |||     |||  |   ||||||   | | ||   |   |  || | || |   | |  ||| | |       ||| |  ||   ||                      
ATCGGAGGAGCTAGTGAAGTCGAGGTAAACGAGAAGAAAGACCGTGTAACTGATGCATTGAACGCCACTAAAGCTGCTGTTGAGGAGGGTATTGTTCCTGgtatg---tccgacaaaatcaac--gttttgtgtgatatgtaaacgt-gtgtaggtttctttgaattagtggcatctcatgaatggtatttagtgtattggattgc---------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218485224|gb|FG951291.1|FG951291
EST:     AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG                         GTGGAGGTGTTGCACTTCTTTATGCATCAA
genomic: AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAA
EST: gi|287010|gb|D15815.1|D15815
EST:     AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG                         GTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
genomic: AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
EST: gi|33795638|gb|CF323689.1|CF323689
EST:     AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG                         GTGGNAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCG
genomic: AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGG-AGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCG
EST: gi|88328307|gb|CI651318.1|CI651318
EST:     AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG                         GTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
genomic: AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
EST: gi|27554443|gb|CA998343.1|CA998343
EST:     AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG                         GTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
genomic: AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
EST: gi|55411061|gb|CV723437.1|CV723437
EST:     AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG                         GTGGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCG
genomic: AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGG-AGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCG
EST: gi|218483700|gb|FG965930.1|FG965930
EST:     AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG                         GTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
genomic: AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
EST: gi|27577977|gb|CB000672.1|CB000672
EST:     AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG                         GTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
genomic: AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
EST: gi|27576373|gb|CA999067.1|CA999067
EST:     AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG                         GTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAAATGCCGA
genomic: AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
EST: gi|27546502|gb|CA764746.2|CA764746
EST:     AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG                         GTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
genomic: AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
EST: gi|86859495|gb|CI278890.1|CI278890
EST:     AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG                         GTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
genomic: AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
EST: gi|88248193|gb|CI248042.1|CI248042
EST:     GCTGTGGAAGAGGGTATTGTACCAG                         GTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
genomic: GCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
EST: gi|55411724|gb|CV724100.1|CV724100
EST:     AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG                         GTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCG
genomic: AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCG
EST: gi|58686259|gb|CK074946.1|CK074946
EST:     AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG                         GTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
genomic: AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
EST: gi|163927982|gb|EG712958.1|EG712958
EST:     AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG                         GTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
genomic: AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
EST: gi|86503371|gb|CI146004.1|CI146004
EST:     ATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG                         GTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
genomic: ATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
EST: gi|218497090|gb|FG953989.1|FG953989
EST:     AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG                         GTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
genomic: AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
EST: gi|218501741|gb|FG957158.1|FG957158
EST:     AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG                         GTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
genomic: AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
EST: gi|58678370|gb|CK067057.1|CK067057
EST:     AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG                         GTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
genomic: AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
EST: gi|25803762|gb|CA759723.1|CA759723
EST:     AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG                         GTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
genomic: AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
EST: gi|58666161|gb|CK054847.1|CK054847
EST:     AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG                         GTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
genomic: AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
EST: gi|86493424|gb|CI136057.1|CI136057
EST:     AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAG                         GTGGAGCTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
genomic: AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGA
EST: gi|33796275|gb|CF324004.1|CF324004
EST:     AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTG-ACCAG                         -TGGGAAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCC
genomic: AGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGG-A-GGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 71 (downstream exon)
Score: 75

ATCGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagtt ... tacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGACTGCTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCGGAGGAGCCAGTGAAGCTGAAGTTGGTGAGAAGAAGGATAGAGTGACAGATGCATTGAATGCCACTAAAGCTGCTGTGGAAGAGGGTATTGTACCAGgtatgcagttgctccacttcagtagatttctttcaatatgttttccttgtaatgtacttgttcagtttgcatctttgcattattatgcccaagtatgctgacatgacatctttgcattacaatacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG