Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCTTGGAAGAAGGTTCTTTGTTACACCATCAGACTCTGTTGCAATAATTGCAGCGAATGCACAGGCAGCAATTCCTTATTTCCAATCTGGTCCAAAAgtaatgagatgttacacattataatgtttttctaaataggatattagactcatcaaagacaagaatgatctcttatgtttgatactttcttcag

Basic information

species Oryza sativa
transcript LOC_Os10g11140.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g11140.2 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G025854_T02 (Zea mays), 5'ss of exon 14
GATTCTTGGAAGAAGGTTCTTTGTTACACCATCAGACTCTGTTGCAATAATTGCAGCGAATGCACAGGCAGCAATTCCTTATTTCCAATCTGGTCCAAAAgtaatgagatgttacacattataatgtttttctaaataggatattagactcatcaaagacaagaatgatctcttatgtttgatactttcttcag
||||||||| | |||||||||| |||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| | |||| ||||||||||| ||||| ||   ||    || || ||        || || | ||     | |  | || |      ||| | ||||    || || ||
GATTCTTGGGAAAAGGTTCTTTATTACCCCATCAGACTCTGTTGCAATAATTGCAGCCAATGCACAGACAGCAATTCCTTATTTCCAGTTTGGTACAAAAgtaatgtgatgtcac---ttcgcttgcttctc--------atttttgtcttggagatggtaggagt----ctttaagcttgaactattttttag

upper sequence: LOC_Os10g11140.2 (Oryza sativa), 5'ss of exon 14
lower sequence: GLYMA10G38590.1 (Glycine max), 5'ss of exon 14
GATTCTTGGAAGAAGGTTCTTTGTTACACCATCAGACTCTGTTGCAATAATTGCAGCGAATGCACAGGCAGCAATTCCTTATTTCCAATCTGGTCCAAAAgtaatgagatgt-tacacattataatgtttttctaaataggatattagactcatcaaagacaagaatgatctcttatgtttgatactttcttcag
|||| | |||||||| |||||||| || || ||||||||||| ||| | |||||||| ||||||   | ||| ||||| || ||| |    |||   || ||    |  |||  |||||||    | ||  ||    ||  |||  ||     | ||   | |  ||  | | || |  |||             
GATTTTAGGAAGAAGTTTCTTTGTAACTCCTTCAGACTCTGTAGCAGTTATTGCAGCCAATGCAAGAGAAGCGATTCCATACTTCAAGAACGGTGTTAAGgttgaaatttgtgcacacatttaggtattcatcattgtaaaatagaag-----tgaagtgccattattctgtattttaattgcag----------

upper sequence: LOC_Os10g11140.2 (Oryza sativa), 5'ss of exon 14
lower sequence: AT5G51820.1 (Arabidopsis thaliana), 5'ss of exon 14
GATTCTTGGAAGAAGGTTCTTTGTTACACCATCAGACTCTGTTGCAATAATTGCAGCGAATGCACAGGCAGCAATTCCTTATTTCCAATCTGGTCCAAAAgtaatgagatgttacacattataatgtttttctaaataggatattagactcatcaaagacaagaatgatctcttatgtttgatactttcttcag
| || | ||||  |  |||||||| || || ||||||||||| || || || ||||| |||||||| | ||||||||| |||||||   ||||||| || ||         ||  | |  || | |||       ||   || |||||   |     |   | | | |     |   |   ||  | |  ||||
GGTTTTAGGAAACAAATTCTTTGTCACTCCTTCAGACTCTGTAGCTATCATCGCAGCCAATGCACAAGAAGCAATTCCATATTTCCGTGCTGGTCCTAAGgtgggattgctttggataaaatgaagttcact---atttaattttagatatagtgccgtttaaacttac----tggatgcaatcttgttctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58691145|gb|CK079832.1|CK079832
EST:     TTGCAGCGAATGCACAGGCAGCAATTCCTTATTTCCAATCTGGTCCACAA                         GGTCTTGCTAGATCAATGCCAACGAGTGGTGCTCTTGATCGTGTAGCTGAT
genomic: TTGCAGCGAATGCACAGGCAGCAATTCCTTATTTCCAATCTGGTCCAAAAgtaatgagat ... ctttcttcagGGTCTTGCTAGATCAATGCCAACGAGTGGTGCTCTTGATCGTGTAGCTGAT
EST: gi|58676489|gb|CK065176.1|CK065176
EST:     TTGCAGCGAATGCACAGGCAGCAATTCCTTATTTCCAATCTGGTCCAAAA                         GGTCTTGCTAGATCAATGCCAACGAGTGGTGCTCTTGATCGTGTAGCTGAT
genomic: TTGCAGCGAATGCACAGGCAGCAATTCCTTATTTCCAATCTGGTCCAAAAgtaatgagat ... ctttcttcagGGTCTTGCTAGATCAATGCCAACGAGTGGTGCTCTTGATCGTGTAGCTGAT
EST: gi|33796171|gb|CF323951.1|CF323951
EST:     TTGCAGCGAATGCACAGGCAGCAATTCCTTATTTCCAATCTGGTCCAAAA                         GGTCTTGCTAGATCAATGCCAACGAGTGGTGCTCTTGATCGTGTAGCTGAT
genomic: TTGCAGCGAATGCACAGGCAGCAATTCCTTATTTCCAATCTGGTCCAAAAgtaatgagat ... ctttcttcagGGTCTTGCTAGATCAATGCCAACGAGTGGTGCTCTTGATCGTGTAGCTGAT