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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgcaatacatctttcttttctactcgagaaatagcttactgagacctgtcatttttgggtcaggtgctaactggtaacagtgacattgcag

Basic information

species Oryza sativa
transcript LOC_Os09g07830.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g07830.3 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G085474_T04 (Zea mays), 5'ss of exon 14
-----------------------GTTCTTAGG---GAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAAT-GGCGGAGGCGGA-GCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAG-CCTTgtaaggcgca------atacatctttcttttctactcgaga-aatagcttactgagacctgtcatttttgggtcaggtgctaac--tggtaacagtgacattgcag--------------------------------------------------------------
                       |||||       |   |||  |         ||    ||||  | || | |      || || | ||||||   |  | |   |   |   | || ||| || |   |    ||       | |  || |||  |  | || | | ||||   |  ||  | |  ||     ||   |   |||| ||  | | ||||  | | | | ||                                                              
GCGGAGGTGGAGCATCAGCTCTTGTTCTCGAACTCGCATAAGAAGCATTGGCTTGAAGCACTGG-ATATGTAGTTAATTCAGTCGCATGCATCTATGCATGatgaagtattgaaaaaaaaagaccctacgatatccatgccgggtgccactgtctgcttaattcaacagaatatgattgtgcaatcattctgccgtgccgcttttgctgaccttaggaaca-cggcgtcggaggcgcaatcattctggcaattagcaccagctagctccctgaggggcgaccttgtactctctac

upper sequence: LOC_Os09g07830.3 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM5G866758_T02 (Zea mays), 5'ss of exon 14
GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAG------CCTTgtaaggcgcaatacatct--ttcttttctactcgagaaa------tagcttactgagacctgtcatt--tttgggtcaggtgctaactggtaacagtgacattgcag---------------------------------------------------------------------------------------
    | |||| |||  ||||||| ||||||||||||||||| ||||| || |||||||||||||| ||||| ||||| ||||| |||||||||       ||||||||| | ||| ||| |   |   | || |||| |          |  ||  |||  |   |    |     |  | ||||||||      ||| || | || |  |                                                                                       
----TCAGGGCGAAGAGTGGCAAGATCGGAGTTGCTGGTGTCTGCAACGGTGGAGGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactcaaaacaccgaatatatctcaactcaaattgattcttttactagctggcagtaggagctaaccagtataaggtgctattatcaaactgtaatatggtcgcatattcagctaggcctaattaagttgtattttttccttttacaactgttgtgcaatttgactaactgctgcaccttgatattgcag

upper sequence: LOC_Os09g07830.3 (Oryza sativa), 5'ss of exon 13
lower sequence: GLYMA17G00910.1 (Glycine max), 5'ss of exon 14
GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgcaatacatctttcttttcta----ctcgagaaatagcttactgagacctgtcatttttgggtcaggtgctaactggtaacagtgacattgcag
||  | ||| ||||  | || ||    || ||||| |   | |||||||| ||||| |||||||||||||| ||||| |||||    ||||     ||     |  ||   |||  |||  |||||     |       ||| | |    |      || | |  | |||||| || | |      |            
GTATTGAGGCAGAAGAGAGGGAAGTATGGTGTTGCCGCCATCTGCAATGGGGGAGGAGGAGCATCTGCTCTTGTTCTTGAGCTCATgtaagcctttttaatttggtcagc-cattgttcagttctaatagtttacagtgtagttaatcctgcttgaacaatatgagatcaggtccttattctgggga------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|42592163|gb|CK738649.1|CK738649
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTTGACATT                   
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAG-C-----C-TTgtaaggcgca ... gaca
EST: gi|42592163|gb|CK738649.1|CK738649
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTTGACATT                   
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAG-C-----C-TTgtaaggcgca ... gaca
EST: gi|42592163|gb|CK738649.1|CK738649
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTTGACATT                   
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAG-C-----C-TTgtaaggcgca ... gaca
EST: gi|42592163|gb|CK738649.1|CK738649
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTTGACATT                   
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAG-C-----C-TTgtaaggcgca ... gaca
EST: gi|42592163|gb|CK738649.1|CK738649
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTTGACATT                   
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAG-C-----C-TTgtaaggcgca ... gaca
EST: gi|86536502|gb|CI176708.1|CI176708
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88256251|gb|CI358639.1|CI358639
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88267020|gb|CI378955.1|CI378955
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88278180|gb|CI399180.1|CI399180
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88270104|gb|CI381402.1|CI381402
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88271010|gb|CI386865.1|CI386865
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88270745|gb|CI386003.1|CI386003
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88462858|gb|CI519770.1|CI519770
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88959704|gb|CI002314.1|CI002314
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88291122|gb|CI527512.1|CI527512
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88273759|gb|CI394165.1|CI394165
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|86537651|gb|CI177857.1|CI177857
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88975140|gb|CI023391.1|CI023391
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88522268|gb|CI450014.1|CI450014
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88243342|gb|CI244464.1|CI244464
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|86412530|gb|CI066935.1|CI066935
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88468574|gb|CI515056.1|CI515056
EST:     GGCGGAGNCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88319137|gb|CI513201.1|CI513201
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88993566|gb|CI110387.1|CI110387
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88436026|gb|CI516562.1|CI516562
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|29640958|gb|CB645965.1|CB645965
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|86498219|gb|CI140852.1|CI140852
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88468140|gb|CI517599.1|CI517599
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|87020189|gb|CI259259.1|CI259259
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88907680|gb|CI091078.1|CI091078
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88265504|gb|CI376406.1|CI376406
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88830971|gb|CI080395.1|CI080395
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88267537|gb|CI379472.1|CI379472
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         CTGATCCATCTCCAGTTCTCCAGGACGGTTTGTGTACTCTAGTTTATTTGA
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACG-TTTGTGTACTCTAGTTTATTTGA
EST: gi|88839196|gb|CI378120.1|CI378120
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|5607308|gb|AU075980.1|AU075980
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|86431389|gb|CI085000.1|CI085000
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88466571|gb|CI532378.1|CI532378
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|89182185|gb|CI113554.1|CI113554
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|89198029|gb|CI117507.1|CI117507
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|86486603|gb|CI129236.1|CI129236
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: gi|88295383|gb|CI527746.1|CI527746
EST:     GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT                         GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgcaatacatctttcttttctactcgagaaatagcttactgagacctgtcatttttgggtcaggtgctaactggtaacagtgacattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC