Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCAAGGAAATTATTTTCGGCTACAGAAAACAATCTCAGTGCAAGCCACAAGTTTTCCGTAGTGTTTATGTTCATTGGGCATCACGAAGCCGCAATGGGgtaactgcactttcttttcagtgtttcaagaattttttatgtttaaatcgcaattattctgaaagtgtgtttactcttatggcatcag

Basic information

species Oryza sativa
transcript LOC_Os08g42600.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g42600.2 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G033828_T02 (Zea mays), 5'ss of exon 15
ATTCAAGGAAATTATTTTCGGCTACAGAAAACAATCTCAGTGCAAGCCACAAGTTTTCCGTAGTGTTTATGTTCATTGGGCATCACGAAGCCGCAATGGGgtaactgc--actttcttttcagtgttt-caagaattttttatgtttaaatcgcaattat-tctgaaagtgtgtttactcttatggcatcag
||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||| || || |||||||||||| |  || ||||||| || ||||||| | |  |  || ||||||   | |  |||||||||    |  | | ||| || | | |||||     | | ||  ||    |      
ATTCAAGGAGATTATTTTCGGCTACAGGAAACAACCTCAGTGCAAGCCACAAGTTTTCCGAAGCGTCTATGTTCATTGGCCCCCAAGAAGCCGTAACGGGgtaagttcctatcttgttttcaacttatataagaattttg---gaatgagtcgaaagtctatctgatcaaat-tgtatcctgccag------

upper sequence: LOC_Os08g42600.2 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G016997_T01 (Zea mays), 5'ss of exon 14
ATTCAAGGAAATTATTTTCGGCTACAGAAAACAATCTCAGTGCAAGCCACAAGTTTTCCGTAGTGTTTATGTTCATTGGGCATCACGAAGCCGCAATGGGgt-aactgcactttcttttcagtgtttcaagaattttttatgtttaaatcgcaattattctgaaagtgtgtttactcttatggcatcag
||||||||| ||| |||| || || || |||||| |||| ||||||||||||||||| || |||||||||||||||||| |  ||  |||||  |||||||| |  |     || |||| ||  ||| ||||||||     | | |  | | | ||  | |||  |  | | ||  ||    |      
ATTCAAGGAGATTGTTTTTGGGTATAGGAAACAACCTCAATGCAAGCCACAAGTTTTTCGAAGTGTTTATGTTCATTGGCCCCCAACAAGCCATAATGGGgttagttctgtcttgtttttagc-ttttaagaatttc--gcgatgagttggaagtttatatgactgaat-tatatcctgccag------

upper sequence: LOC_Os08g42600.2 (Oryza sativa), 5'ss of exon 14
lower sequence: Vv04s0008g02780.t01 (Vitis vinifera), 5'ss of exon 14
ATTCAAGGAAATTATTTTCGGCTACAGAAAACAATCTCAGTGCAAGCCACAAGTTTTCCGTAGTGTTTATGTTCATTGGGCATCACGAAGCCGCAATGGGgtaactgcactttcttttcagtgtttcaagaattttttatgtttaaatcgcaattattctgaaagtgtgtttactcttatggcatcag
 |||| |||||| |||  |  |||||| || ||  | || |||||||||||| ||||||||||||| | |||| ||||| |||||  | |||||||||| |||  |   |||  | |  | | | | |    |   || ||||  |   | |||        |||  | |  |||  | | | | |||
CTTCAGGGAAATAATTCACAACTACAGGAAGCAGCCACAATGCAAGCCACAAATTTTCCGTAGTGTGTTTGTTGATTGGTCATCAGCACGCCGCAATGGAgtatgt-tgcttaatctctattctcttagtgttagcttctgttctatgggaaatct------aagcctttcaactgattttg-aacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58675166|gb|CK063853.1|CK063853
EST:     AAGTTTTCCGTAGTGTTTATGTTCATTGGGCATCACGAAGCCGCAATGGG                         AAAACAGGGGAGGACCATGTTGACATTATCACTTTCTACAACGAAGTATTT
genomic: AAGTTTTCCGTAGTGTTTATGTTCATTGGGCATCACGAAGCCGCAATGGGgtaactgcac ... atggcatcagAAAACAGGGGAGGACCATGTTGACATTATCACTTTCTACAACGAAGTATTT
EST: gi|58602114|gb|CK012642.1|CK012642
EST:     AGTTTTCCCGTAGTGTTTATGTTCATTGGGCATCACGAAGCCGCAATGGG                         AAAACAGGGGAGGACCATGTTGACATTATCACTTTCTACAACGAAGTATTT
genomic: AGTTTT-CCGTAGTGTTTATGTTCATTGGGCATCACGAAGCCGCAATGGGgtaactgcac ... atggcatcagAAAACAGGGGAGGACCATGTTGACATTATCACTTTCTACAACGAAGTATTT