1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CGGCTTGATGTGGACCCAAAAGAGGAGAGCAGGACATTCTTAACGTTCGTCATCCCCCATGAGAAAGAACCACTTCTGACGgtactgcttcctcacccaaaactctggctgtcataacatcatgctttaatttcatgataggctaatatattttccattaagcag
species | Oryza sativa |
transcript | LOC_Os08g30740.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GGACATTCTTAACGTTCGTCATCCCCCATGAGAAAGAACCACTTCTGACG AGGTTCTTTGGGGAACTCCAAGACAGGGAACGGGAATTCGGTATCTCAGACEST: gi|29640977|gb|CB645984.1|CB645984
genomic: GGACATTCTTAACGTTCGTCATCCCCCATGAGAAAGAACCACTTCTGACGgtactgcttc ... cattaagcagAGGTTCTTTGGGGAACTCCAAGACAGGGAACGGGAATTCGGTATCTCAGAC
EST: GGACATTCTTAACGTTCGTCATCCCCCATGAGAAAGAACCACTTCTGACG AGGTTCTTTGGGGAACTCCAAGACAGGGAACGGGAATTCGGTATCTCAGACEST: gi|86513227|gb|CI155860.1|CI155860
genomic: GGACATTCTTAACGTTCGTCATCCCCCATGAGAAAGAACCACTTCTGACGgtactgcttc ... cattaagcagAGGTTCTTTGGGGAACTCCAAGACAGGGAACGGGAATTCGGTATCTCAGAC
EST: CATCCCCCATGAGAAAGAACCACTTCTGACG AGGTTCTTTGGGGAACTCCAAGACAGGGAACGGGAATTCGGTATCTCAGACEST: gi|87041903|gb|CI196525.1|CI196525
genomic: CATCCCCCATGAGAAAGAACCACTTCTGACGgtactgcttc ... cattaagcagAGGTTCTTTGGGGAACTCCAAGACAGGGAACGGGAATTCGGTATCTCAGAC
EST: GGACATTCTTAACGTTCGTCATCCCCCATGAGAAAGAACCACTTCTGACG AGGTTCTTTGGGGAACTCCAAGACAGGGAACGGGAATTCGGTATCTCAGACEST: gi|8527411|gb|AU092226.1|AU092226
genomic: GGACATTCTTAACGTTCGTCATCCCCCATGAGAAAGAACCACTTCTGACGgtactgcttc ... cattaagcagAGGTTCTTTGGGGAACTCCAAGACAGGGAACGGGAATTCGGTATCTCAGAC
EST: CCACTTCTGACG AGGTTCTTTGGGGGAACTCCCAAGACAGGNAACGGGGAATTCGGTATCTCCEST: gi|87037618|gb|CI192240.1|CI192240
genomic: CCACTTCTGACGgtactgcttc ... cattaagcagAGGTTCTTT-GGGGAACT-CCAAGACAGGGAAC-GGGAATTCGGTATCT-C
EST: ACCACTTCTGACG AGGTTCTTTGGGGAACTCCAAGACAGGGAACGGGAATTCGGTATCTCAGACEST: gi|29640976|gb|CB645983.1|CB645983
genomic: ACCACTTCTGACGgtactgcttc ... cattaagcagAGGTTCTTTGGGGAACTCCAAGACAGGGAACGGGAATTCGGTATCTCAGAC
EST: GGACATTCTTAACGTTCGTCATCCCCCATGAGAAAGAACCACTTCTGACG AGGTTCTTTGGGGAACTEST: gi|33793662|gb|CF322715.1|CF322715
genomic: GGACATTCTTAACGTTCGTCATCCCCCATGAGAAAGAACCACTTCTGACGgtactgcttc ... cattaagcagAGGTTCTTTGGGGAACT
EST: GGACATTCTTAACGTTCGTCATCCCCCATGAGAAAGAACCACTTCTGACG AGGTTCTTTGGGGAACTCCAAGACAGGGAACGGGAATTCGGTATCTCAGAC
genomic: GGACATTCTTAACGTTCGTCATCCCCCATGAGAAAGAACCACTTCTGACGgtactgcttc ... cattaagcagAGGTTCTTTGGGGAACTCCAAGACAGGGAACGGGAATTCGGTATCTCAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCTTGATGTGGACCCAAAAGAGGAGAGCAGGACATTCTTAACGTTCGTCATCCCCCATGAGAAAGAACCACTTCTGACGgtactgcttcctcacccaaaactctggctgtcataacatcatgctttaatttcatgataggctaatatattttccattaagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC