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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAATTCAAGATAAATGTTGAATGCAACCACGCTACTCTATCTGGACATAGgttagtttcttgcttccctaacgtcattcaaggtagcttacagtggcagtgtcataactccatggaaaatttgcag

Basic information

species Oryza sativa
transcript LOC_Os07g47290.3
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g47290.3 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G005493_T01 (Zea mays), 5'ss of exon 14
GAGAATTCAAGATAAATGTTGAATGCAACCACGCTACTCTATCTGGACATAGgttagtttcttgcttccctaacgtcattcaaggtagcttacagtggcagtgtcataactccatggaaaatttgcag
|||| |||||||| |||||||| |||||||| |||||||||||||||||||||| | ||| |||||| |||||| ||| |||    |  |   |  |          |||| ||||  ||| ||||||
GAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACATAGgtaatttttttgcttgcctaacttcagtcatataatttcttaaag----------aactacatgttaaacttgcag

upper sequence: LOC_Os07g47290.3 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G081682_T01 (Zea mays), 5'ss of exon 14
GAGAATTCAAGATAAATGTTGAATGCAACCACGCTACTCTATCTGGACATAGgttag--tttcttgcttccctaacgtcattcaag--gtagcttacagtggcagtgtcataactccatggaaaatttgcag
|||| |||||||| |||||||| |||||||| ||||||||||||||||| |||| ||  ||| |||||| |||||  | | |  |    ||||||| ||            |||| ||||  ||| ||||||
GAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACAGgtaaggtttttttgcttgcctaaattgagttgaataatagcttaaag------------aactgcatgttaaacttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29637953|gb|CB642962.1|CB642962
EST:     GAATTCAAGATAAATGTTGAATGCAACCACGCTACTCTATCTGGACATAG                         CTGCCACCATG
genomic: GAATTCAAGATAAATGTTGAATGCAACCACGCTACTCTATCTGGACATAGgttagtttct ... aaatttgcagCTGCCACCATG