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GAACTTTGTTCAATCAGGTTTTGATATGAACCTTGCTTTCTGTAATCAGGAGAAGAAGCAAAGGAATGAGgttagctaaagattttcccttaatcttctatgcttaaatttacgacaacagaagttggaaaatacagaaccaaccaattagctgatgttagctcattttc...
species | Oryza sativa |
transcript | LOC_Os07g46450.2 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TTGATATGAACCTTGCTTTCTGTAATCAGGAGAAGAAGCAAAGGAATGAG --GG-CCCCGCAGGTGCATCGCATTGGAGAAGCATCAAGCAGCACGTGCTAEST: gi|58666427|gb|CK055113.1|CK055113
genomic: TTGATATGAACCTTGCTTTCTGTAATCAGGAGAAGAAGCAAAGGAATGAGgttagctaaa ... tgtgtgacagCAGGGCCCCGCAGGTGCATCGCATTGGAGAAGCATCAAGCAGCACGTGCTA
EST: TTGATATGAACCTTGCTTTCTGTAATCAGGAGAAGAAGCAAAGGAATGAG --GG-CCCCGCAGGTGCATCGCATTGGAGAAGCATCAAGCAGCACGTGCTA
genomic: TTGATATGAACCTTGCTTTCTGTAATCAGGAGAAGAAGCAAAGGAATGAGgttagctaaa ... tgtgtgacagCAGGGCCCCGCAGGTGCATCGCATTGGAGAAGCATCAAGCAGCACGTGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACTTTGTTCAATCAGGTTTTGATATGAACCTTGCTTTCTGTAATCAGGAGAAGAAGCAAAGGAATGAGgttagctaaagattttcccttaatcttctatgcttaaatttacgacaacagaagttggaaaatacagaaccaaccaattagctgatgttagctcattttc
- - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA