1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTTATTGGTTGGTGGCAAACTTTACCAGAGGAAGAGAAGCAGACTgttagtgtctcccaactttcttaaataggcatattacactaccttcaaccatattgtcatattcacgccttcttgtttcag
species | Oryza sativa |
transcript | LOC_Os07g43390.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GTTATTGGTTGGTGGCAAACTTTACCAGAGGAAGAGAAGCAGACT GTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCACTGEST: gi|86837121|gb|CI347629.1|CI347629
genomic: GTTATTGGTTGGTGGCAAACTTTACCAGAGGAAGAGAAGCAGACTgttagtgtct ... cttgtttcagGTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCACTG
EST: AAGAGAAGCAGACT GTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCACTGEST: gi|88832166|gb|CI017400.1|CI017400
genomic: AAGAGAAGCAGACTgttagtgtct ... cttgtttcagGTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCACTG
EST: GTTATTGGTTGGTGGCAAACTTTACCAGAGGAAGAGAAGCAGACT GTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCACTGEST: gi|89186521|gb|CI048193.1|CI048193
genomic: GTTATTGGTTGGTGGCAAACTTTACCAGAGGAAGAGAAGCAGACTgttagtgtct ... cttgtttcagGTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCACTG
EST: GTTATTGGTTGGTGGCAAACTTTACCAGAGGAAGAGAAGCAGACT GTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCACTGEST: gi|89163744|gb|CI100634.1|CI100634
genomic: GTTATTGGTTGGTGGCAAACTTTACCAGAGGAAGAGAAGCAGACTgttagtgtct ... cttgtttcagGTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCACTG
EST: GTTATTGGTTGGTGGCAAACTTTACCAGAGGAAGAGAAGCAGACT GTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCACTGEST: gi|88223687|gb|CI223536.1|CI223536
genomic: GTTATTGGTTGGTGGCAAACTTTACCAGAGGAAGAGAAGCAGACTgttagtgtct ... cttgtttcagGTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCACTG
EST: GTTATTGGTTGGTGGCAAACTTTACCAGAGGAAGAGAAGCAGACT GTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCACTGEST: gi|86504785|gb|CI147418.1|CI147418
genomic: GTTATTGGTTGGTGGCAAACTTTACCAGAGGAAGAGAAGCAGACTgttagtgtct ... cttgtttcagGTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCACTG
EST: GTTATTGGTTGGTGCCAAACTTTACCAGAGGAAGAGAAGCAGACT GTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCACTG
genomic: GTTATTGGTTGGTGGCAAACTTTACCAGAGGAAGAGAAGCAGACTgttagtgtct ... cttgtttcagGTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTATTGGTTGGTGGCAAACTTTACCAGAGGAAGAGAAGCAGACTgttagtgtctcccaactttcttaaataggcatattacactaccttcaaccatattgtcatattcacgccttcttgtttcag
- - - - TGGTGG
- - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - AGAAGC