1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCCAAGgttatttactttcttgaatgtacattcttttataacacggagtgcatgcagattatatctgcctgtctgtaatgctcctttttttgttattccag
species | Oryza sativa |
transcript | LOC_Os07g27790.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: ATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCCAAG AATGGATTAGAAAGAAGAGGGTACAAGGAGGTTGGTTTCTTAAGAGAGGTTEST: gi|55408876|gb|CV721252.1|CV721252
genomic: ATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCCAAGgttatttact ... gttattccagAATGGATTAGAAAGAAGAGGGTACAAGGAGGTTGGTTTCTTAAGAGAGGTT
EST: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCCAAG AATGGATTAGAAAGAAGAGGGTACAAGGGAGGTTGGTTTCTTAAGAGAEST: gi|29682925|gb|CB679200.1|CB679200
genomic: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCCAAGgttatttact ... gttattccagAATGGATTAGAAAGAAGAGGGTACAAGG-AGGTTGGTTTCTTAAGAGA
EST: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCCAAG AATGGATTAGAAAGAAGAGGGTACAAGGAGGTTGGTTTCTTAAGAGAGGTTEST: gi|29679437|gb|CB675712.1|CB675712
genomic: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCCAAGgttatttact ... gttattccagAATGGATTAGAAAGAAGAGGGTACAAGGAGGTTGGTTTCTTAAGAGAGGTT
EST: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCCAAG AATGGATTAGAAAGAAGAGGGTACAAGGAGGTTGGTTTCTTAAGAGAGGTTEST: gi|572041|gb|D41552.1|D41552
genomic: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCCAAGgttatttact ... gttattccagAATGGATTAGAAAGAAGAGGGTACAAGGAGGTTGGTTTCTTAAGAGAGGTT
EST: GGATGGATATGTAAGAGATCTAGCTGNAGAAATTCTTGCAGTTGTCCAAG AATGGATTATGAAAGEST: gi|218493685|gb|FG958530.1|FG958530
genomic: GGATGGATATGTAAGAGATCTAGCTGAAGAAATTCT-GCAGTTGTCCAAGgttatttact ... gttattccagAATGGATTA-GAAAG
EST: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCCAAG AATGGATTAGAAAGAAGAGGGTACAAGGAGGTTGGTTTCTTAAGAGAGGTT
genomic: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCCAAGgttatttact ... gttattccagAATGGATTAGAAAGAAGAGGGTACAAGGAGGTTGGTTTCTTAAGAGAGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCCAAGgttatttactttcttgaatgtacattcttttataacacggagtgcatgcagattatatctgcctgtctgtaatgctcctttttttgttattccag
- - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG