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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCAGCTCTGGCTCTTCGAAAGGTCCCTCAGTGTAATAGCTCCTGGATGAATGATTTTATCCGCCAgtaagttctgaccaggcatatcttgggactaaagttttggcaagaaaggagataatgaaaatttcatttcgcatgcag

Basic information

species Oryza sativa
transcript LOC_Os07g22720.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g22720.2 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G161969_T01 (Zea mays), 5'ss of exon 9
GCTGCAGCTCTGGCTCTTCGAAAGGTCCCTCAGTGTAATAGCTCCTGGATGAATGATTTTATCCGCCAgtaagttctgaccaggcatatct--tggga-----ctaaagttttg-gcaagaaaggagataatgaaaat-ttcatttcgcatgcag
||||||||| |||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||  |     ||| | |  ||| |     |||   | | |  |   | || || |||  |      | |||||   | |||
GCTGCAGCTTTGGCTCTTAGAAAGGTCCCTCAGTGTAACAGCTCATGGATGAATGATTTTATTCGCCAgtaagttcatatggttcatttgtactggaaaggtcctattatctcgtaccctagagcagttaaaaatggcacttatttctggtacag

upper sequence: LOC_Os07g22720.2 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G015132_T01 (Zea mays), 5'ss of exon 13
GCTGCAGCTCTGGCTCTTCGAAAGGTCCCTCAGTGTAATAGCTCCTGGATGAATGATTTTATCCGCCAgtaagttctgaccaggcatatct--tgggactaaagttt---------tggcaagaaaggagataatgaaaatttcatttcgcatgcag
||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||  |     ||| | |  |||||  | | |||         ||||    ||      |||   |   | |||||   | |||
GCTGCAGCTTTGGCCCTTCGAAAGGTCCCTCAGTGTAACAGCTCATGGATGAATGATTTTATTCGGCAgtaagttcctatggttcatttgtactgggaagatattttattatctcatggcctagaacagttaaatatgacacttatttctggtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58680453|gb|CK069140.1|CK069140
EST:     CGAAAGGTCCCTCAGTGTAATAGCTCCTGGATGAATGATTTTATCCGCCA                         ATACCACAACGTGAACATCAATGTTGCTGTACAGACTGAGCATGGACTGTT
genomic: CGAAAGGTCCCTCAGTGTAATAGCTCCTGGATGAATGATTTTATCCGCCAgtaagttctg ... tcgcatgcagATACCACAACGTGAACATCAATGTTGCTGTACAGACTGAGCATGGACTGTT
EST: gi|55410697|gb|CV723073.1|CV723073
EST:     CGAAAGGTCCCTCAGTGTAATAGCTCCTGGATGAATGATTTTATCCGCCA                         ATACCACAACGTGAACATCAATGTTGCTGTACAGACTGAGCATGGACTGTT
genomic: CGAAAGGTCCCTCAGTGTAATAGCTCCTGGATGAATGATTTTATCCGCCAgtaagttctg ... tcgcatgcagATACCACAACGTGAACATCAATGTTGCTGTACAGACTGAGCATGGACTGTT