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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACACCTGCTGGATATTCTAGGATGGCGTCCATGCTAACTGCTTGTTCACAGGGAAAATTGTTGGTTATACTTGAGGGAGGgtaggtacccagatgttctatcaatttaagataaatatatattcaaaaggtaggcaatgcctagaaatttgatccgcttgagatgatcacctgtaggctg...

Basic information

species Oryza sativa
transcript LOC_Os07g06980.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g06980.2 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G107309_T08 (Zea mays), 5'ss of exon 1
-----------------GTCACACCTGCTGGATATTCTAGGATGGCGTCCATGCTAACTGCTTGTTCACAGGGAAAATTGTTGGTTATACTTGAGGGAGGgtaggtacccagatgttctatcaatttaagataaatata-----tattcaaaaggtaggcaatgcctagaaatttgatccgcttgagatgatcacctgtaggctg
                 ||||| ||  ||||||| ||| ||||| | ||| ||||| ||| ||  ||| | |||| ||||||||| ||||||||||||||||| |||||  |   || | ||||||  ||| |||||||     |    | || || |  | |      |      || |     |  || |   |  || |   
TCCTTCTTCAATATTAGGTCACTCCAACTGGATACTCTTGGATGACATCCCTGCTAGCTGGTTCCTCAAATGGAAGATTGTTGGTGATACTTGAGGGAGGgtatgtacctgg---ttttctcaattctagaaaaatataaccaatgcgtagaaagttgaaagttatggtaggacatatacatactac-tgctttgccctaagtc-

upper sequence: LOC_Os07g06980.2 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G107309_T05 (Zea mays), 5'ss of exon 14
GTCACACCTGCTGGATATTCTAGGATGGCGTCCATGCTAACTGCTTGTTCACAGGGAAAATTGTTGGTTATACTTGAGGGAGGgtaggtacccagatgttctatcaatttaagataaatata-----tattcaaaaggtaggcaatgcctagaaatttgatccgcttgagatgatcacctgtaggctg
||||| ||  ||||||| ||| ||||| | ||| ||||| ||| ||  ||| | |||| ||||||||| ||||||||||||||||| |||||  |   || | ||||||  ||| |||||||     |    | || || |  | |      |      || |     |  || |   |  || |   
GTCACTCCAACTGGATACTCTTGGATGACATCCCTGCTAGCTGGTTCCTCAAATGGAAGATTGTTGGTGATACTTGAGGGAGGgtatgtacctgg---ttttctcaattctagaaaaatataaccaatgcgtagaaagttgaaagttatggtaggacatatacatactac-tgctttgccctaagtc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86498642|gb|CI141275.1|CI141275
EST:     ATGCTAACTGCTTGTTCACAGGGAAAATTGTTGGTTAAACTTGAGGGAGG                         AAACAATCTTCGGTCTAAATCCTCATCAGCTACTGAAGTTGTTAAG
genomic: ATGCTAACTGCTTGTTCACAGGGAAAATTGTTGGTTATACTTGAGGGAGGgtaggtaccc ... tttggtgcagATACAATCTTCGGTCTATATCCTCATCAGCTACTGAAGTTGTTAAG
EST: gi|58586909|gb|CF985217.1|CF985217
EST:     ATGCTAACTGCTTGTTCACAGGGAAAATTGTTGGTTATACTTGAGGGAGG                         ATACAATCTTCGGTCTATATCCTCATCAGCTACTGAAGTTGTTAAG
genomic: ATGCTAACTGCTTGTTCACAGGGAAAATTGTTGGTTATACTTGAGGGAGGgtaggtaccc ... tttggtgcagATACAATCTTCGGTCTATATCCTCATCAGCTACTGAAGTTGTTAAG
EST: gi|58681336|gb|CK070023.1|CK070023
EST:     ATACTTGAGGGAGG                         ATACAATCTTCGGTCTATATCCTCATCAGCTACTGAAGTTGTTAAG
genomic: ATACTTGAGGGAGGgtaggtaccc ... tttggtgcagATACAATCTTCGGTCTATATCCTCATCAGCTACTGAAGTTGTTAAG
EST: gi|29644494|gb|CB649501.1|CB649501
EST:     ATGCTAACTGCTTGTTCACAGGGAAAATTGTTGGTTATACTTGAGGGAGG                         ATACAATCTTCGGTCTATATCCTCATCAGCTACTGAAGTTGTTAAG
genomic: ATGCTAACTGCTTGTTCACAGGGAAAATTGTTGGTTATACTTGAGGGAGGgtaggtaccc ... tttggtgcagATACAATCTTCGGTCTATATCCTCATCAGCTACTGAAGTTGTTAAG
EST: gi|58665950|gb|CK054636.1|CK054636
EST:     ATGCTAACTGCTTGTTCACAGGGAAAATTGTTGGTTATACTTGAGGGAGG                         ATACAATCTTCGGTCTATA
genomic: ATGCTAACTGCTTGTTCACAGGGAAAATTGTTGGTTATACTTGAGGGAGGgtaggtaccc ... tttggtgcagATACAATCTTCGGTCTATA