Sequence
atgc intronic sequence ATGC exonic sequenceTAAAAAACGTGGTGTTGCTGTCATGTCAGTAACAGAACTATTTAATTTTGTGATTGATCAAAATATTGCTGATGAAGATGTTGATCATTACCTGGAAAAGgtattttctcaatgtcacctttcagtctttctatagccactgagttctagatgtgccctgatcatgttgctttatgatgggcagaatgtctgatggattaacaattttgttgtgatgttag
Basic information
species | Oryza sativa |
transcript | LOC_Os07g06820.2 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os07g06820.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G035098_T01 (Zea mays), 5'ss of exon 11
TAAAAAACGTGGTGTTGCTGTCATGTCAGTAACAGAACTATTTAATTTTGTGATTGATCAAAATATTGCTGATGAAGATGTTGATCATTACCTGGAAAAGgtatttt---ctcaatgtcacctttcagtctttctatagccactgagttctagatgtgccctgatcatgttgctttatgatgggcagaatgtctgatggattaacaattttgttgtgatgttag
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TAAAAAACGTGGTGTTCCTGTCATGACAGTAACCGATTTGTTTAATTTTGTTATTGATCAAAGCATTTCTGATGAAGGTGTTGATGATTATCTGGAAAAGgtacttttgtctttaagggctagtttgggagccaaaaaactggaggggattgaaggggctaaaatcccctt--cttattcaaaaataaataagaagggaatt----------------------
upper sequence: LOC_Os07g06820.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G120329_T02 (Zea mays), 5'ss of exon 10
TAAAAAACGTGGTGTTGCTGTCATGTCAGTAACAGAACTATTTAATTTTGTGATTGATCAAAATATTGCTGATGAAGATGTTGATCATTACCTGGAAAAGgtattttc-tcaatgtcacct-ttcagtctttctatagccactgagttctagatgtgccctgatcatgttgctttatgatgggcagaatgtctgatggattaacaattttgttgtgatgttag
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TAAAAAACGTGGTGTTCCTGTCATGACAGTAACGGATTTGTTTAATTTTGTTATTGATCAAAGCATTTCTGATGAAGATGTTGATGATTACCTGGAAAAGgtacttttgtctttaagggctatttgggagcaaaaataccagagaggattgaaggggctaaaatcccttt--cttattttaaaataaataagaaaggaaatt---------------------
upper sequence: LOC_Os07g06820.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G120329_T01 (Zea mays), 5'ss of exon 9
TAAAAAACGTGGTGTTGCTGTCATGTCAGTAACAGAACTATTTAATTTTGTGATTGATCAAAATATTGCTGATGAAGATGTTGATCATTACCTGGAAAAGgtattttc-tcaatgtcacct-ttcagtctttctatagccactgagttctagatgtgccctgatcatgttgctttatgatgggcagaatgtctgatggattaacaattttgttgtgatgttag
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-----------------------------TAACGGATTTGTTTAATTTTGTTATTGATCAAAGCATTTCTGATGAAGATGTTGATGATTACCTGGAAAAGgtacttttgtctttaagggctatttgggagcaaaaataccagagaggattgaaggggctaaaatcccttt--cttattttaaaataaataagaaaggaaatt---------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|428791|gb|D24947.1|D24947EST: TGATTGATCAAAATATTGCTGATGAAGATGTTGATCATTACCTGGAAAAG ATTCAGCAAAAGATGTTGGAAAATGGAGATATGGTTGCAAACGACGATGAA
genomic: TGATTGATCAAAATATTGCTGATGAAGATGTTGATCATTACCTGGAAAAGgtattttctc ... gtgatgttagATTCAGCAAAAGATGTTGGAAAATGGAGATATGGTTGCAAACGACGATGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAAAAAACGTGGTGTTGCTGTCATGTCAGTAACAGAACTATTTAATTTTGTGATTGATCAAAATATTGCTGATGAAGATGTTGATCATTACCTGGAAAAGgtattttctcaatgtcacctttcagtctttctatagccactgagttctagatgtgccctgatcatgttgctttatgatgggcagaatgtctgatggattaacaattttgttgtgatgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG