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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCAAGCAGGCGTACATGCGCGGCAAGAGGGTACTCGAGATCAACCCCAGGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagcttattagatcgacaaaaacctcactaatatttatcatttctttgcttccaaatacgtcgaaaaaaaaacttatggttttgtgcaatcttgatgcag

Basic information

species Oryza sativa
transcript LOC_Os06g50300.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g50300.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G141931_T02 (Zea mays), 5'ss of exon 14
CAGCAAGCAGGCGTACATGCGCGGCAAGAGGGTACTCGAGATCAACCCCAGGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagcttattagatcgacaaaaacctcactaatatttatcatttctttgcttccaaatacgtcgaaaaaaa--aacttatggttttgtgc-aatcttgatgcag-----------
 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||   | ||||   |  |    |     |  ||  ||     ||       |   ||  |||||| | |  |     | |  |   || |||   ||    | | |            
GAGCAAGCAGGCGTACATGCGCGGCAAGAGGGTGCTCGAGATCAACCCCAGGCACCCCATCATCAAGGAGCTCCGCGACAAGGTCGCCCAGGACAACGAGgtaccttaccttacctgcactttga----tttgctcgtaaggggcacacacacgaacccgcatacgtgggaggatgttgattcgtttgttcgtgttgattgcaacgtaaaacaacaacag

upper sequence: LOC_Os06g50300.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G399073_T03 (Zea mays), 5'ss of exon 14
CAGCAAGCAGGCGTACATGCGCGGCAAGAGGGTACTCGAGATCAACCCCAGGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagcttattagatcgacaaaaacctcactaatatttatcatttctttgcttccaa-----atacgtcgaaaaaaaaact----tatggttttgtgcaatcttgatgcag----------------------
 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||  ||     |||| | | |   | |  ||||  |  |  | |   | | |   | |      || ||| | |  |  || |     | | |  ||     | |    |  |                      
GAGCAAGCAGGCGTACATGCGCGGCAAGAGGGTGCTGGAGATCAACCCCAGGCACCCCATCATCAAGGAGCTCCGCGACAAGGTCGCCCAGGACAACGAGgtacctaattaccttagctag-ctctagctgcact--tgctcgttaaaccatgggagctagcatgcatgcgtgggaggatgaaatgaaacacgatgctgattcgtttgttcgttggttcgtaaaacaacaacaacag

upper sequence: LOC_Os06g50300.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GLYMA17G37820.1 (Glycine max), 5'ss of exon 14
-CAGCAAGCAGGCGTACATGCGCGGCAAGAGGGTACTCGAGATCAACCCCAGGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagcttattagatcgacaaaaacctcactaatatttatcatttctttgcttccaaatacgtcgaaaaaaaaacttatggttttgtgcaatcttgatgcag
  |||||||| || |||||||||||||||||||| || ||| |||| || |||||||| || |||||||| ||||| || |  || |   || ||   |||||||  |  || |||               || ||      | || |||| |    || |     ||  |      |||| |   |    |  | | || |     
CTAGCAAGCAAGCATACATGCGCGGCAAGAGGGTTCTTGAGGTCAATCCTAGGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAggtac--attctaatt--------------ttctctgtggcctctc-tttcctcaactcaattggggtttatctgttaactcacaatcggctttacttttca-----

upper sequence: LOC_Os06g50300.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GLYMA14G40320.4 (Glycine max), 5'ss of exon 14
CAGCAAGCAGGCGTACATGCGCGGCAAGAGGGTACTCGAGATCAACCCCAGGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagcttattagatcgacaaaaacctcactaatatttatcatttctttgcttccaaatacgtcgaaaaaaaaacttatggttttgtgcaatcttgatgcag
 |||||||| || |||||||||||||||||||| || |||||||| || |||||||| || |||||||| ||||| || |  || |   || ||   ||||||      | |  |||||    | ||   |  || |    | || |||| |    || ||    ||  |      |||  |   | |  |  | | || |     
TAGCAAGCAAGCATACATGCGCGGCAAGAGGGTTCTTGAGATCAATCCTAGGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgta------cattctagattattagaacattttctgaggcatctc-tttcctcaactcaaatggggtttatctgttaac--acaatctgctttacttttcag----

upper sequence: LOC_Os06g50300.1 (Oryza sativa), 5'ss of exon 14
lower sequence: AT4G24190.1 (Arabidopsis thaliana), 5'ss of exon 14
CAGCAAGCAGGCGTACATGCGCGGCAAGAGGGTACTCGAGATCAACCCCAGGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagcttattagatcgacaaaaacctcactaatatttatcatttctttgcttccaaatacgtcgaaaaaaaaacttatggttttgtgcaatcttgatgcag
 |  ||||| || ||||||||||| ||||| || ||||||||||||||  | ||||| |||||||| ||||||   || |   | ||    |||   ||||||            | |   ||| ||  | ||  |||     || ||| ||| ||| |   |   |   | ||| ||  ||   |         |||        
TAATAAGCAAGCTTACATGCGCGGAAAGAGAGTCCTCGAGATCAACCCACGACACCCTATCATCAAAGAACTCAAGGATAGAATTGCAAGTGACCCAGAGgta------------aaacaaacataagacccatcaat-----tcttttttttacttactg-tctattagagaaataaactaacataccaaattctctcag-----

upper sequence: LOC_Os06g50300.1 (Oryza sativa), 5'ss of exon 14
lower sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 14
CAGCAAGCAGGCGTACATGCGCGGCAAGAGGGTACTCGAGATCAACCCCAGGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagcttattagatcgacaaaaacctcactaat-atttat-catttctttgcttccaaatacgtcgaaaaaaaaacttatggttttgtgcaatcttgatgcag
||||||||| || || ||||| ||||||||||| || ||||| ||||| ||||| || ||||||||||| || |  || |  || |   ||||||| ||||||       |||     |        |  |   ||||  | ||| ||||||||     |    || || | |  |        |     |||    |  |||     
CAGCAAGCAAGCATATATGCGTGGCAAGAGGGTGCTTGAGATAAACCCAAGGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAGgtat---gttttagagacttttttgtcatttacttaattgtctatgcatttcttataacctggttatgtaggagcatggcacacttaaaatgtatctttatga-----

upper sequence: LOC_Os06g50300.1 (Oryza sativa), 5'ss of exon 14
lower sequence: EFJ17496 (Selaginella moellendorffii), 5'ss of exon 15
CAGCAAGCAGGCGTACATGCGCGGCAAGAGGGTACTCGAGATCAACCCCAGGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagcttattagatcgacaaaaacctcactaatatttatcatttctttgcttccaaatacgtcgaaaaaaaaacttatggttttgtgcaatcttgatgcag
|  ||  |||   ||||||||||| ||||| || || |||||||| ||| | |||||||||||||||||  | ||||  || || | |  | ||||| ||    |    ||  || |    |||| | |         | || |||| || ||| || | |                                             
CTCCAGACAGAACTACATGCGCGGAAAGAGAGTGCTGGAGATCAATCCCCGTCACCCCATCATCAAGGAGTTGCGTGGGAAAGTGGAC--GAACAGCCAGAGgttcgt-ctagtttgcattacaagatcta-------agttctcatctcattgttttctacag------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29629185|gb|CB634196.1|CB634196
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|89161473|gb|CI099445.1|CI099445
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86517884|gb|CI158090.1|CI158090
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86413046|gb|CI067451.1|CI067451
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCCGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88260896|gb|CI361484.1|CI361484
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAAGACGGCGAAGCTGGTGTACCAAGACGGCCATCA
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCA-GACGGCGAAGCTGGTGTACCA-GACGGCCCTCA
EST: gi|8859305|gb|AU096623.1|AU096623
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGNTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88834493|gb|CI077776.1|CI077776
EST:     GGCACCCNATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|29681884|gb|CB678159.1|CB678159
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86259122|gb|CI010423.1|CI010423
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|29627896|gb|CB632907.1|CB632907
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86889690|gb|CI299888.1|CI299888
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGG
EST: gi|109712953|gb|CI105561.1|CI105561
EST:     GGCACCCNATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88216201|gb|CI216050.1|CI216050
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86871522|gb|CI342321.1|CI342321
EST:     CCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: CCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86425874|gb|CI070971.1|CI070971
EST:     GCACCCCATCATGCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GCACCCCATCAT-CAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|89187190|gb|CI047257.1|CI047257
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88840666|gb|CI080120.1|CI080120
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88908352|gb|CI090945.1|CI090945
EST:     TCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: TCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86826022|gb|CI362456.1|CI362456
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86413560|gb|CI019145.1|CI019145
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCACG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|29677922|gb|CB674197.1|CB674197
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|29678875|gb|CB675150.1|CB675150
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86435963|gb|CI107196.1|CI107196
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGATAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86257209|gb|CI004027.1|CI004027
EST:     TCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: TCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88219096|gb|CI220369.1|CI220369
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86838055|gb|CI343315.1|CI343315
EST:     GCACCCCATCATCAAGGAACTCCGTGACAA-GTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86426659|gb|CI071756.1|CI071756
EST:     AGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: AGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88964817|gb|CI084815.1|CI084815
EST:     CCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: CCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88251363|gb|CI349791.1|CI349791
EST:     TCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: TCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86841838|gb|CI337482.1|CI337482
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86251839|gb|CI019031.1|CI019031
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|89183723|gb|CI046288.1|CI046288
EST:     CATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: CATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86430319|gb|CI082742.1|CI082742
EST:     GGCACCCGATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|33653838|gb|CF276452.1|CF276452
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCNCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88375028|gb|CI523293.1|CI523293
EST:     CCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCANACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: CCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88842494|gb|CI081750.1|CI081750
EST:     GGCACCCNATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|89194892|gb|CI003356.1|CI003356
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|89195216|gb|CI051329.1|CI051329
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAACTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88996800|gb|CI389466.1|CI389466
EST:     CCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: CCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|89194093|gb|CI116530.1|CI116530
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88829013|gb|CI073883.1|CI073883
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88990376|gb|CI107802.1|CI107802
EST:     GGCACCCCATCATCGAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|29657458|gb|CB653733.1|CB653733
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88257916|gb|CI360502.1|CI360502
EST:     ACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: ACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|89189580|gb|CI049119.1|CI049119
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88264828|gb|CI367479.1|CI367479
EST:     GTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88906436|gb|CI375508.1|CI375508
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88983168|gb|CI020732.1|CI020732
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86412615|gb|CI067020.1|CI067020
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTAGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86535349|gb|CI175555.1|CI175555
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|24208804|gb|AU225831.1|AU225831
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88234738|gb|CI234587.1|CI234587
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88248587|gb|CI248436.1|CI248436
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88248223|gb|CI248072.1|CI248072
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88832943|gb|CI369833.1|CI369833
EST:     GAACTCCGTGACAAGGTCTCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88967332|gb|CI002504.1|CI002504
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88831073|gb|CI080497.1|CI080497
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|89197127|gb|CI021967.1|CI021967
EST:     CGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: CGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88829560|gb|CI074430.1|CI074430
EST:     GGCACCCGATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|89178023|gb|CI391202.1|CI391202
EST:     CCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: CCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86431563|gb|CI085174.1|CI085174
EST:     GGCACCCGATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|87033876|gb|CI188500.1|CI188500
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|66927053|gb|CX113901.1|CX113901
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86601876|gb|CI258552.1|CI258552
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|29659229|gb|CB655504.1|CB655504
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88961064|gb|CI096467.1|CI096467
EST:     AAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: AAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|89198849|gb|CI003586.1|CI003586
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88253501|gb|CI352127.1|CI352127
EST:     CTCCCTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: CTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88985361|gb|CI002878.1|CI002878
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86493855|gb|CI136488.1|CI136488
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86873104|gb|CI328484.1|CI328484
EST:     -GCACCCCATCATC-AGGAACTCCGTGAC-AGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86430240|gb|CI082663.1|CI082663
EST:     GGCACCCAATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86525692|gb|CI165898.1|CI165898
EST:     CGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: CGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88830253|gb|CI076509.1|CI076509
EST:     GGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|86869236|gb|CI338960.1|CI338960
EST:     CGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: CGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
EST: gi|88236827|gb|CI234754.1|CI234754
EST:     GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAG                         AGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG
genomic: GGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 72 (downstream exon)
Score: 117

CAGCAAGCAGGCGTACATGCGCGGCAAGAGGGTACTCGAGATCAACCCCAGGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagc ... cttgatgcagAGCGAGAGCTTGAAGCAGACGGCGAAGCTGGTGTACCAGACGGCCCTCATGGAGAGCGGCTTCAACCTTCCTGATCCCAAGGACTTCGCCTCCAGCATCT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGCAAGCAGGCGTACATGCGCGGCAAGAGGGTACTCGAGATCAACCCCAGGCACCCCATCATCAAGGAACTCCGTGACAAGGTCGCCCAGGACAGCGAGgtactgaagcttattagatcgacaaaaacctcactaatatttatcatttctttgcttccaaatacgtcgaaaaaaaaacttatggttttgtgcaatcttgatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA