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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAGgtatgtatttgtccttgctgcacatagtatgcaaaatctgtaacactgagtcactgaccaacagtgaaacgggacaaaaatttcaatctcagtgctaacagctgatggtgatgcatatccag

Basic information

species Oryza sativa
transcript LOC_Os06g49990.3
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g49990.3 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G116434_T01 (Zea mays), 5'ss of exon 14
GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAGgtatgtatttgtccttgctgcacatagtatgcaaaa-tctgtaacactgagtcactgaccaacagtgaaacgggacaaaaatttcaatctcagtgctaacagctgatggtgatgcatatccag
|| |||||||| ||||||||||||||||| |||||||| ||||||||||||| | | | ||   |  ||| |||| |||||| |  ||   | ||| ||| ||  ||| |  ||| ||  |   | ||   ||| || |                                 
GTGATGAAAAACGGATATATTGCAACTGTCACCCTCTTCCAATCATGAGgtacgcaat-gtggcttttgcccataatatgcacatctccagagcacggag-catggacta--agttaactg--tcgaagtcttccattttgacag---------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88445930|gb|CI549653.1|CI549653
EST:     GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAG                         CCGCATCTGCATTAATGGTTAGACAGTGCTGCTACTCCAAATGGGACTCTA
genomic: GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAGgtatgtattt ... gcatatccagCCGCATCTGCATTAATGGTTAGACAGTGCTGCTACTCCAAATGGGACTCTA