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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAGgtatgtatttgtccttgctgcacatagtatgcaaaatctgtaacactgagtcactgaccaacagtgaaacgggacaaaaatttcaatctcag

Basic information

species Oryza sativa
transcript LOC_Os06g49990.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g49990.2 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G116434_T01 (Zea mays), 5'ss of exon 14
GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAGgtatgtatttgtccttgctgcacatagtatgcaaaa-tctgtaacactgagtcactgaccaacagtgaaacgggacaaaaatttcaatctcag---
|| |||||||| ||||||||||||||||| |||||||| ||||||||||||| | | | ||   |  ||| |||| |||||| |  ||   | ||| ||| ||  ||| |  ||| ||  |   | ||   ||| || |      
GTGATGAAAAACGGATATATTGCAACTGTCACCCTCTTCCAATCATGAGgtacgcaat-gtggcttttgcccataatatgcacatctccagagcacggag-catggacta--agttaactgt--cgaagtcttccattttgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218783416|gb|GE329468.1|GE329468
EST:     GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAG                         TGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCT
genomic: GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAGgtatgtattt ... tcaatctcagTGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCT
EST: gi|27578134|gb|CB000829.1|CB000829
EST:     GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAG                         TGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
genomic: GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAGgtatgtattt ... tcaatctcagTGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
EST: gi|88508220|gb|CI435726.1|CI435726
EST:     GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAG                         TGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
genomic: GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAGgtatgtattt ... tcaatctcagTGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
EST: gi|88566864|gb|CI497581.1|CI497581
EST:     TTTCAATC-TCAG                         TGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
genomic: TTTCAATCATGAGgtatgtattt ... tcaatctcagTGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
EST: gi|33687914|gb|CF316153.1|CF316153
EST:     GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAG                         TGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
genomic: GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAGgtatgtattt ... tcaatctcagTGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
EST: gi|86834903|gb|CI345987.1|CI345987
EST:     GTCATGAAAAATGGATATATTGCAAATGTTACCCTCTTTCAATCATGAG                         TGCTAACACCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
genomic: GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAGgtatgtattt ... tcaatctcagTGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
EST: gi|27577736|gb|CB000431.1|CB000431
EST:     GGCATGAAAAATGGATCTTTTGCAACTGTTACCCTCTTTCAATCATGAG                         TGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
genomic: GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAGgtatgtattt ... tcaatctcagTGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
EST: gi|88427508|gb|CI548761.1|CI548761
EST:     GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAG                         TGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
genomic: GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAGgtatgtattt ... tcaatctcagTGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
EST: gi|88469123|gb|CI406394.1|CI406394
EST:     GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAG                         TGCTAACAGCTGATNGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
genomic: GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAGgtatgtattt ... tcaatctcagTGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
EST: gi|88504066|gb|CI431572.1|CI431572
EST:     GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAG                         TGCTAACAGCTGATGGTGATGCATATCCACCCGCATCTGCATTAATGGTTA
genomic: GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAGgtatgtattt ... tcaatctcagTGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
EST: gi|88249403|gb|CI249252.1|CI249252
EST:     GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAG                         TGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
genomic: GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAGgtatgtattt ... tcaatctcagTGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
EST: gi|88565703|gb|CI496420.1|CI496420
EST:     TTTCAATC-TCAG                         TGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
genomic: TTTCAATCATGAGgtatgtattt ... tcaatctcagTGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
EST: gi|33687915|gb|CF316154.1|CF316154
EST:     GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAG                         TGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
genomic: GTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAGgtatgtattt ... tcaatctcagTGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
EST: gi|88565726|gb|CI496443.1|CI496443
EST:     TTTCAATC-TCAG                         TGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA
genomic: TTTCAATCATGAGgtatgtattt ... tcaatctcagTGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTA