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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTCGCTTAAGATCTATTATGGACTACCCAAATCTTAAGGCACAGCTTTTTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAGgtttgtacagcaccaattgtctgccccttctagatttcctttttggccattataatcatctctttttgttattttcagtacatatccccattagtagctgtttgtgtgtttgactgctgtgttctttaagtccataaatcttaattgtttactattagttacctttgagaactcacatggctatttgatattttag

Basic information

species Oryza sativa
transcript LOC_Os06g47350.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g47350.2 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G415846_T02 (Zea mays), 5'ss of exon 12
CTTTCGCTTAAGATCTATTATGGACTACCCAAATCTTAAGGCACAGCTTTTTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAGgtttgtacagcaccaattgtctgccccttctagatttcctttttggccattataatcatctctttttgttattttcagtacatatccccattagtagctgtttgtgtgtttgactgctgtgttctttaagtccataaatcttaattgtttactattagttacctttgagaactcacatggctatttgatattttag
|||||| ||||||||||||||||||||||||||||||||   ||| ||||||   |||| | |  |  ||||||||   |||||| || | || |||||||| |    | |||  | |  |  || ||||||   |  ||||    |     |||   | | |||   ||||      || |||| |    |  ||  ||    ||  |||   || | |                                                                            
CTTTCGGTTAAGATCTATTATGGACTACCCAAATCTTAAACAACAACTTTTTCGAATGCGAATCCGGGATATCTTGGTCCACCCATTGCAGCCATTAAAGgtct----aacac--actcccaaccacttctactgtatcttt----cagcagtaactgtgtttttcctttat-----ataaatatacatgatgttaattgac-atgacttttgatgttatag--------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27334393|gb|CA882844.1|CA882844
EST:     TTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAG                         GTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
genomic: TTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAGgtttgtacag ... gatattttagGTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
EST: gi|2799623|gb|AA752612.1|AA752612
EST:     TTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAG                         GTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
genomic: TTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAGgtttgtacag ... gatattttagGTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
EST: gi|58668152|gb|CK056838.1|CK056838
EST:     TTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAG                         GTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
genomic: TTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAGgtttgtacag ... gatattttagGTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
EST: gi|218504600|gb|FG967431.1|FG967431
EST:     TTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAG                         GTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
genomic: TTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAGgtttgtacag ... gatattttagGTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
EST: gi|66922574|gb|CX109422.1|CX109422
EST:     TTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAG                         GTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
genomic: TTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAGgtttgtacag ... gatattttagGTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
EST: gi|218500322|gb|FG953822.1|FG953822
EST:     TTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAG                         GTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
genomic: TTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAGgtttgtacag ... gatattttagGTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
EST: gi|218504331|gb|FG952706.1|FG952706
EST:     GGAACCTTTAAAG                         GTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
genomic: GGAACCTTTAAAGgtttgtacag ... gatattttagGTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
EST: gi|218499202|gb|FG956934.1|FG956934
EST:     TTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAG                         GTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
genomic: TTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAGgtttgtacag ... gatattttagGTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
EST: gi|58668829|gb|CK057515.1|CK057515
EST:     TTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAG                         GTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
genomic: TTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAGgtttgtacag ... gatattttagGTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
EST: gi|58680790|gb|CK069477.1|CK069477
EST:     TTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAG                         GTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
genomic: TTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAGgtttgtacag ... gatattttagGTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
EST: gi|56158395|gb|AU075492.2|AU075492
EST:     TTAACATGCCATTTGGATATATC-TGACACACCCACTGGAACCTTTAAAG                         GTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
genomic: TTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAGgtttgtacag ... gatattttagGTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
EST: gi|218492292|gb|FG954140.1|FG954140
EST:     TTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAG                         GTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC
genomic: TTAACATGCCATTTGGATATATCTTGACACACCCACTGGAACCTTTAAAGgtttgtacag ... gatattttagGTTTGCTTGCCATCGATAGTTGATGAGTTCCTGAGGCAGGCCAAGGCTGCC