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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTTTGGGGATTGGATAAGAAGCTGGCTCAAAGAAAGCATTTCCCATCTGTCAATTGGCTCATCTCTTACTCAAAATACTCAAAGgttattcctaacttccctatgatgtcaatacaattaaaatcgccattttacactaacatactatatcctgtactgtag

Basic information

species Oryza sativa
transcript LOC_Os06g45120.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g45120.1 (Oryza sativa), 5'ss of exon 14
lower sequence: Vv04s0008g02580.t01 (Vitis vinifera), 5'ss of exon 15
GTCTTTTGGGGATTGGATAAGAAGCTGGCTCAAAGAAAGCATTTCCCATCTGTCAATTGGCTCATCTCTTACTCAAAATACTCAAAGgttattcctaacttccctatgatgtcaatacaattaaaatcgccattttacactaacatactatatcctgt--actgtag-----------------------------------------
|| || ||||| ||||| || ||||| ||||| || || |||||||||||||| || ||||| || |||||||| || |||||||  || | | ||    | |  |        || | |||    |  |  |       | | ||  ||   |||    ||  | |                                         
GTGTTCTGGGGTTTGGACAAAAAGCTTGCTCAGAGGAAACATTTCCCATCTGTAAACTGGCTTATTTCTTACTCTAAGTACTCAACCgtaagttcttctgttcaaacacaccagatgctattgttttttctttaggtgtattatatgttaacgccttctcaccatggattaatttcttaagctcacttattgctttgtacattttcag

upper sequence: LOC_Os06g45120.1 (Oryza sativa), 5'ss of exon 14
lower sequence: EFJ33015 (Selaginella moellendorffii), 5'ss of exon 14
GTCTTTTGGGGATTGGATAAGAAGCTGGCTCAAAGAAAGCATTTCCCATCTGTCAATTGGCTCATCTCTTACTCAAAATACTCAAAGgttattcctaacttccctatgatgtcaatacaattaaaatcgccattttacactaacatactatatcctgtactgtag
|| ||||||||| | || |||||||| || |||||||||||||||||  ||||||| ||||| || ||||| || || ||  |  |||| |      || |   |||  ||||      |  |  || |    |||    | |   |                  
GTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAGgtgaga---gacatttatatcttgtctcgtggaaaaccattgattgtttcttttgatgcag-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58611693|gb|CK039405.1|CK039405
EST:     AGCATTTCCCATCTGTCAATTGGCTCATCTCTTACTCAAAATACTCAAAG                         GCTCTGGAATCCTTCTATGAGAAGTTTGATCCAGATTTCCTTGATATTAGA
genomic: AGCATTTCCCATCTGTCAATTGGCTCATCTCTTACTCAAAATACTCAAAGgttattccta ... tgtactgtagGCTCTGGAATCCTTCTATGAGAAGTTTGATCAAGATTTCATTGATATTAGA
EST: gi|33804193|gb|CF327971.1|CF327971
EST:     AGCATTTCCCATCTGTCAATTGGCTCATCTCTTACTCAAAATACTCAAAG                         GCTCTGGAATCCTTCTATGAGAAGTTTGATCAAGATTTCATTGATATTAGA
genomic: AGCATTTCCCATCTGTCAATTGGCTCATCTCTTACTCAAAATACTCAAAGgttattccta ... tgtactgtagGCTCTGGAATCCTTCTATGAGAAGTTTGATCAAGATTTCATTGATATTAGA
EST: gi|116875037|gb|EC365545.1|EC365545
EST:     AGCATTTCCCATCTGTCAATTGGCTCATCTCTTACTCAAAATACTCAAAG                         GCTCTGGAATCCTTCTATGAGAAGTTTGATCAAGATTTCATTGATATTAGA
genomic: AGCATTTCCCATCTGTCAATTGGCTCATCTCTTACTCAAAATACTCAAAGgttattccta ... tgtactgtagGCTCTGGAATCCTTCTATGAGAAGTTTGATCAAGATTTCATTGATATTAGA
EST: gi|88735905|gb|CI757480.1|CI757480
EST:     AGCATTTCCCATCTGTCAATTGGCTCATCTCTTACTCAAAATACTCAAAG                         GCTCTGGAATCCTTCTATGAGAAGTTTGATCAAGATTTCATTGATATTAGA
genomic: AGCATTTCCCATCTGTCAATTGGCTCATCTCTTACTCAAAATACTCAAAGgttattccta ... tgtactgtagGCTCTGGAATCCTTCTATGAGAAGTTTGATCAAGATTTCATTGATATTAGA
EST: gi|66919084|gb|CX105932.1|CX105932
EST:     AGCATTTCCCATCTGTCAATTGGCTCATCTCTTACTCAAAATACTCAAAG                         GCTCTGGAATCCTTCTATGAGAAGTTTGATCAAGATTTCATTGATATTAGA
genomic: AGCATTTCCCATCTGTCAATTGGCTCATCTCTTACTCAAAATACTCAAAGgttattccta ... tgtactgtagGCTCTGGAATCCTTCTATGAGAAGTTTGATCAAGATTTCATTGATATTAGA
EST: gi|116875538|gb|EC366046.1|EC366046
EST:     AGCATTTCCCATCTGTCAATTGGCTCATCTCTTACTCAAAATACTCAAAG                         GCTCTGGAATCCTTCTATGAGAAGTTTGATCAAGATTTCATTGATATTAGA
genomic: AGCATTTCCCATCTGTCAATTGGCTCATCTCTTACTCAAAATACTCAAAGgttattccta ... tgtactgtagGCTCTGGAATCCTTCTATGAGAAGTTTGATCAAGATTTCATTGATATTAGA
EST: gi|58657888|gb|CK046568.1|CK046568
EST:     AGCATTTCCCATCTGTCAATTGGCTCATCTCTTACTCAAAATACTCAAAG                         GCTCTGGAATCCTTCTATGAGAAGTTTGATCAAGATTTCATTGATATTAGA
genomic: AGCATTTCCCATCTGTCAATTGGCTCATCTCTTACTCAAAATACTCAAAGgttattccta ... tgtactgtagGCTCTGGAATCCTTCTATGAGAAGTTTGATCAAGATTTCATTGATATTAGA
EST: gi|29617005|gb|CB622017.1|CB622017
EST:     AGCATTTCCCATCTGTCAATTGGCTCATCTCTTACTCAAAATACTCAAAG                         GCTCTGGAATCCTTCTATGACAAGTTTGATCGAGATTTCATTGATATTAGA
genomic: AGCATTTCCCATCTGTCAATTGGCTCATCTCTTACTCAAAATACTCAAAGgttattccta ... tgtactgtagGCTCTGGAATCCTTCTATGAGAAGTTTGATCAAGATTTCATTGATATTAGA