Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGCCTCCAAAAATTGGGAATATTGGGCACATAACTCGAATAGCTAATAAGCTTATTCAACTGGGAAATAGCAACAGCATAATCCAGTCTCATTTGCAGgtactttgagtttctcttctttcgttagcctatcactttagcaattgcatgatgtacttcttgtgcataatatcatctaaactttattaattagctaacttggtgaataatgtctttacag

Basic information

species Oryza sativa
transcript LOC_Os05g51490.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g51490.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM5G812498_T01 (Zea mays), 5'ss of exon 4
GGTGCCTCCAAAAATTGGGAATATTGGGCACATAACTCGAATAGCTAATAAGCTTATTCAACTGGGAAATAGCAACAGCATAATCCAGTCTCATTTGCAGgtactttgagtttctcttctttcgttagcctatcacttt-agcaattgcatgatgtacttcttgtgcataatatcatctaaactttattaattagctaacttggtgaataatgtctttacag
 |  ||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||| | |||||||| |||||||| ||||||  ||| ||||||||| ||  | ||||| ||   || || ||| |  | ||  | |  |||  | ||||||| ||| |||||  ||| | ||    |||||                                  
AGAACCTCCAAGAATTGGGAATATTGGGCACATAACTCGAATAGCGAATAAGCTCATTCAATTTGGAAATAGTAACAGCATGATCCAGAGTCACTTGCAGgtatttccaatttctgtttcatctttggccaacaatttggaactgttgtgtcatgtact-cttttgcatt-tataaacttttgtttatag--------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58612771|gb|CK040483.1|CK040483
EST:     GCTTATTCAAGCGGGGAAATAGCAACAGCATAATCCAGTCTCATTTGCAG                         GAGAACAGCGAGTGGGTTGAATGGCAGACAACTGCCCTGGTCAAACGCAAT
genomic: GCTTATTCAA-CTGGGAAATAGCAACAGCATAATCCAGTCTCATTTGCAGgtactttgag ... gtctttacagGAGAACAGCGAGTGGGTTGAATGGCAGACAACTGCCCTGGTCAAACGCAAT
EST: gi|58653975|gb|CK042655.1|CK042655
EST:     AGCTTATTCAACTGGGAAATAGCAACAGCATAATCCAGTCTCATTTGCAG                         GAGAACAGCGAGTGGGTTGAATGGCAGACAACTGCCCTGGTCAAACGCAAT
genomic: AGCTTATTCAACTGGGAAATAGCAACAGCATAATCCAGTCTCATTTGCAGgtactttgag ... gtctttacagGAGAACAGCGAGTGGGTTGAATGGCAGACAACTGCCCTGGTCAAACGCAAT
EST: gi|58689163|gb|CK077850.1|CK077850
EST:     AGCTTATTCAACTGGGAAATAGCAACAGCATAATCCAGTCTCATTTGCAG                         GAGAACAGCGAGTGGGTTGAATGGCAGACAACTGCCCTGGTCAAACGCAAT
genomic: AGCTTATTCAACTGGGAAATAGCAACAGCATAATCCAGTCTCATTTGCAGgtactttgag ... gtctttacagGAGAACAGCGAGTGGGTTGAATGGCAGACAACTGCCCTGGTCAAACGCAAT