1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
TTCTGTTCGTCTGGTTAGTTGTACCTCTCGGGAGCTAGTGGATCAATGGAATGCACCAGAAGGATTTTCAGTCAATGTTGCATCAGCTAATGCCAGTCAGgtaggtttcctgggaccccttttttctctgggtaagtttcatctcgtcaaaatgcacctagaagttacaggcaggagtcataagccagacatgaatgtga...
species | Oryza sativa |
transcript | LOC_Os05g51480.2 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: ATGCACCAGAAGGATTTTCAGTCAATGTTGCATCAGCTAATGCCAGTCAG GTTCTGCTGGCAACAGGTGGTGGCCATCTTGTTTACCTCGAAATTAAGGATEST: gi|58695351|gb|CK084038.1|CK084038
genomic: ATGCACCAGAAGGATTTTCAGTCAATGTTGCATCAGCTAATGCCAGTCAGgtaggtttcc ... tgtgttgcagGTTCTGCTGGCAACAGGTGGTGGCCATCTTGTTTACCTCGAAATTAAGGAT
EST: ATGCACCAGAAGGATTTTCAGTCAATGTTGCATCAGCTAATGCCAGTCAG GTTCTGCTGGCAACAGGTGGTGGCCATCTTGTTTACCTCGAAATTAAGGATEST: gi|29630334|gb|CB635343.1|CB635343
genomic: ATGCACCAGAAGGATTTTCAGTCAATGTTGCATCAGCTAATGCCAGTCAGgtaggtttcc ... tgtgttgcagGTTCTGCTGGCAACAGGTGGTGGCCATCTTGTTTACCTCGAAATTAAGGAT
EST: ATGCACCAGAAGGATTTTCAGTCAATGTTGCATCAGCTAATGCCAGTCAG GTTCTGCTGGCAACAGGTGGTGGCCATCTTGTTTACCTCGAAATTAAGGATEST: gi|87009621|gb|CI309142.1|CI309142
genomic: ATGCACCAGAAGGATTTTCAGTCAATGTTGCATCAGCTAATGCCAGTCAGgtaggtttcc ... tgtgttgcagGTTCTGCTGGCAACAGGTGGTGGCCATCTTGTTTACCTCGAAATTAAGGAT
EST: ATGCACCAGAAGGATTTTCAGTCAATGTTGCATCAGCTAATGCCAGTCAG GTTCTGCTGGCAACA
genomic: ATGCACCAGAAGGATTTTCAGTCAATGTTGCATCAGCTAATGCCAGTCAGgtaggtttcc ... tgtgttgcagGTTCTGCTGGCAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTGTTCGTCTGGTTAGTTGTACCTCTCGGGAGCTAGTGGATCAATGGAATGCACCAGAAGGATTTTCAGTCAATGTTGCATCAGCTAATGCCAGTCAGgtaggtttcctgggaccccttttttctctgggtaagtttcatctcgtcaaaatgcacctagaagttacaggcaggagtcataagccagacatgaatgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT