1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TGGAGTTGCCCTTCTGTATGCCACCAAGGAGCTTGACAAGATTATCACAGCAAATGAGGATGAAAAGATTGGAGTTCAAATTATCAAGAATGCTTTGAAGgttagttcctgtattggttttggcgtttcatgtgcctgatggcttgtttcttaaacatgtaataatctctgaatttctgtag
species | Oryza sativa |
transcript | LOC_Os05g46290.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: AAAAGATTGGAGTTCAAATTATCAAGAATGCTTTGAAG GCTCCTTTGATGACTATAGCTGCAAATGCTGGCATTGATGGTGGTGTGGTCEST: gi|66913046|gb|CX099894.1|CX099894
genomic: AAAAGATTGGAGTTCAAATTATCAAGAATGCTTTGAAGgttagttcct ... atttctgtagGCTCCTTTGATGACTATAGCTGCAAATGCTGGCATTGATGGTGGTGTGGTC
EST: CAAATGAGGATGAAAAGATCGGAGTTCAAATTATCAAGAATGCTTTGAAG GCTCCTTTGATGACTATAGCTGCAAATGCTGGCATTGATGGTGGTGTGGTCEST: gi|29615903|gb|CB620915.1|CB620915
genomic: CAAATGAGGATGAAAAGATTGGAGTTCAAATTATCAAGAATGCTTTGAAGgttagttcct ... atttctgtagGCTCCTTTGATGACTATAGCTGCAAATGCTGGCATTGATGGTGGTGTGGTC
EST: CAAATGAGGATGAAAAGATTGGAGTTCAAATTATCAAGAATGCTTTGAAG GCTCCTTTGATGACTATAGCTGCAAATGCTGGCATTGATGGTGGTGTGGTC
genomic: CAAATGAGGATGAAAAGATTGGAGTTCAAATTATCAAGAATGCTTTGAAGgttagttcct ... atttctgtagGCTCCTTTGATGACTATAGCTGCAAATGCTGGCATTGATGGTGGTGTGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGTTGCCCTTCTGTATGCCACCAAGGAGCTTGACAAGATTATCACAGCAAATGAGGATGAAAAGATTGGAGTTCAAATTATCAAGAATGCTTTGAAGgttagttcctgtattggttttggcgtttcatgtgcctgatggcttgtttcttaaacatgtaataatctctgaatttctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG