1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AAACACTCGATTGTTAATTTTGTTATTGACATCAATTCTTTATGGGGAATCTTCCAAGCCGCATCTTAGAGGAGTTGACATAGTTAAGCAACATGAGTTGgtatggtgtttgaattgtgtttgtgtaatttttatcgcgtggcactaagttattaacttataaatcctgatctgattattgcagtattgcatttaacag
species | Oryza sativa |
transcript | LOC_Os05g43374.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CTTCCAAGCCGCATCTTAGAGGAGTTGACATAGTTAAGCAACATGAGTTG CCCAAATGAATCGGCATTGAGATATACCATGCTGCTCGGCCTGCTCCCGTTEST: gi|86869632|gb|CI322118.1|CI322118
genomic: CTTCCAAGCCGCATCTTAGAGGAGTTGACATAGTTAAGCAACATGAGTTGgtatggtgtt ... catttaacagCCCAAATGAATCGGCATTGAGATATACCATGCTGCTCGGCCTGCTCCCGTT
EST: CTTCCAAGCCGCATCTTAGAGGAGTTGACATAGTTAAGCAACATGAGTTG CCCAAATGAATCGGCATTGAGATATACCATGCTGCTCGGCCTGCTCCCGTTEST: gi|88502883|gb|CI430389.1|CI430389
genomic: CTTCCAAGCCGCATCTTAGAGGAGTTGACATAGTTAAGCAACATGAGTTGgtatggtgtt ... catttaacagCCCAAATGAATCGGCATTGAGATATACCATGCTGCTCGGCCTGCTCCCGTT
EST: CTTCCAAGCCGCATCTTAGAGGAGTTGACATAGTTAAGCAACATGAGTTG CCCAAATGAATCGGCATTGAGATATACCATGCTGCTCGGCCTGCTCCCGTTEST: gi|88510224|gb|CI437730.1|CI437730
genomic: CTTCCAAGCCGCATCTTAGAGGAGTTGACATAGTTAAGCAACATGAGTTGgtatggtgtt ... catttaacagCCCAAATGAATCGGCATTGAGATATACCATGCTGCTCGGCCTGCTCCCGTT
EST: CTTCCAAGCCGCATCTTAGAGGAGTTGACATAGTTAANCAACATGAGTTG CCCAAATGAATCGGCATTGAGATATACCATGCTGCTCGGCCTGCTCCCGTTEST: gi|86827246|gb|CI270918.1|CI270918
genomic: CTTCCAAGCCGCATCTTAGAGGAGTTGACATAGTTAAGCAACATGAGTTGgtatggtgtt ... catttaacagCCCAAATGAATCGGCATTGAGATATACCATGCTGCTCGGCCTGCTCCCGTT
EST: CTTCCAAGCCGCATCTTAGAGGAGTTGACATAGTTAAGCAACATGAGTTG CCCAAATGAATCGGCATTGAGATATACCATGCTGCTCGGCCTGCTCCCGTTEST: gi|88484492|gb|CI421763.1|CI421763
genomic: CTTCCAAGCCGCATCTTAGAGGAGTTGACATAGTTAAGCAACATGAGTTGgtatggtgtt ... catttaacagCCCAAATGAATCGGCATTGAGATATACCATGCTGCTCGGCCTGCTCCCGTT
EST: CTTCCAAGCCGCATCTTAGAGGAGTTGACATAGTTAAGCAACATGAGTTG CCCAAATGAATCGGCATTGAGATATACCATGCTGCTCGGCCTGCTCCCGTT
genomic: CTTCCAAGCCGCATCTTAGAGGAGTTGACATAGTTAAGCAACATGAGTTGgtatggtgtt ... catttaacagCCCAAATGAATCGGCATTGAGATATACCATGCTGCTCGGCCTGCTCCCGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACACTCGATTGTTAATTTTGTTATTGACATCAATTCTTTATGGGGAATCTTCCAAGCCGCATCTTAGAGGAGTTGACATAGTTAAGCAACATGAGTTGgtatggtgtttgaattgtgtttgtgtaatttttatcgcgtggcactaagttattaacttataaatcctgatctgattattgcagtattgcatttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA