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GTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAGgttagtaactttcttgaatgtacattcttttataacacggagtgcatgcagattatagtaatgctcctttttttgttattccag
species | Oryza sativa |
transcript | LOC_Os05g03820.3 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAG AATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTTEST: gi|86831376|gb|CI299434.1|CI299434
genomic: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAGgttagtaact ... gttattccagAATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTT
EST: TTCTGCAGTTGTCTAAG AATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTTEST: gi|88723315|gb|CI746825.1|CI746825
genomic: TTCTGCAGTTGTCTAAGgttagtaact ... gttattccagAATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTT
EST: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCCAAG AATGGATTAGAAAGAAGAGGGTACAAGGAGGTTGGTTTCTTAAGAGAGGTTEST: gi|11442624|gb|BF430527.1|BF430527
genomic: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAGgttagtaact ... gttattccagAATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTT
EST: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAG AATGGATTAGAAAGAGGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTTEST: gi|29645922|gb|CB650929.1|CB650929
genomic: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAGgttagtaact ... gttattccagAATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTT
EST: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAG AATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTTEST: gi|2311262|gb|C27417.1|C27417
genomic: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAGgttagtaact ... gttattccagAATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTT
EST: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAG AATGGATTAGAAAGAAGAGGGTACAAGNNAGTTGGTTTCTTAAGAGAGGTTEST: gi|58663354|gb|CK052040.1|CK052040
genomic: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAGgttagtaact ... gttattccagAATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTT
EST: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAG AATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTTEST: gi|2311714|gb|C27869.1|C27869
genomic: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAGgttagtaact ... gttattccagAATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTT
EST: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAG AATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTTEST: gi|56157390|gb|D48012.2|D48012
genomic: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAGgttagtaact ... gttattccagAATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTT
EST: TGCAGTTGTCTAAG AATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTTEST: gi|58695197|gb|CK083884.1|CK083884
genomic: TGCAGTTGTCTAAGgttagtaact ... gttattccagAATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTT
EST: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAG AATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTTEST: gi|88981214|gb|CI026944.1|CI026944
genomic: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAGgttagtaact ... gttattccagAATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTT
EST: CTAGCTGAAGAAATTCTGCAGTTGTCTAAG AATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTTEST: gi|66928215|gb|CX115063.1|CX115063
genomic: CTAGCTGAAGAAATTCTGCAGTTGTCTAAGgttagtaact ... gttattccagAATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTT
EST: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAG AATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTTEST: gi|89198318|gb|CI007378.1|CI007378
genomic: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAGgttagtaact ... gttattccagAATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTT
EST: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAG AATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTTEST: gi|86900529|gb|CI298364.1|CI298364
genomic: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAGgttagtaact ... gttattccagAATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTT
EST: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAG AATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTT
genomic: GGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAGgttagtaact ... gttattccagAATGGATTAGAAAGAAGAGGGTACAAGGAAGTTGGTTTCTTAAGAGAGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACCTGTAACCGGTTTGAAGACACCCTTCCGGGATGGATATGTAAGAGATCTAGCTGAAGAAATTCTGCAGTTGTCTAAGgttagtaactttcttgaatgtacattcttttataacacggagtgcatgcagattatagtaatgctcctttttttgttattccag
- - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG